Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11f08
         (597 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)                 29   2.9  
SB_44752| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1589

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +2

Query: 440 QIMLSASGGGMYRDGEELMNSNDTSEQVLALVPPELHKYLTVXPKNSSVNST 595
           +I     GG +   GEEL ++ D +   + ++  EL +   +  +NSS+ S+
Sbjct: 39  EIRAGDQGGFLLPSGEELYSNMDKTPDAVGVIMLELQRSPFITSQNSSITSS 90


>SB_44752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 421

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 578 SSSGAPSDTCAARGGPGLALVPTCRSNSSALLHPY-TFPR 462
           +SS + S    A GGPG A VP  ++N   ++  Y TFPR
Sbjct: 257 TSSDSRSPMSPAGGGPGDAFVPP-QTNGGVVVSGYSTFPR 295


>SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1880

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 253  GKRKHGVGELKRCHNSVQRHLLSAETKLR*VQRHL-SSERDATAQVCFGR 399
            G+ KHG+G  +R   ++  H + A  K    ++ +  +++    +VCFG+
Sbjct: 1712 GQMKHGIGSKQRTTGNI--HKVPASLKCDNCEKTIRKNQKSVACEVCFGQ 1759


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,264,460
Number of Sequences: 59808
Number of extensions: 338947
Number of successful extensions: 1116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)