Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11f08
(597 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical pr... 29 1.9
U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z75533-3|CAA99822.1| 868|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z46381-9|CAI58660.1| 807|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z46381-8|CAA86517.2| 808|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF016688-6|AAB66074.2| 274|Caenorhabditis elegans Hypothetical ... 29 3.3
AJ243182-1|CAB45863.1| 2857|Caenorhabditis elegans inositol 1,4,... 28 4.4
AJ243181-1|CAB45862.1| 2836|Caenorhabditis elegans inositol 1,4,... 28 4.4
AJ243180-1|CAB45861.1| 2892|Caenorhabditis elegans inositol 1,4,... 28 4.4
AJ243179-1|CAB45860.1| 2846|Caenorhabditis elegans inositol 1,4,... 28 4.4
AF168688-1|AAF05302.1| 2846|Caenorhabditis elegans inositol 1,4,... 28 4.4
AF036702-4|AAK68365.1| 2857|Caenorhabditis elegans Inositol trip... 28 4.4
AF036702-3|AAK68366.1| 2846|Caenorhabditis elegans Inositol trip... 28 4.4
AF036702-2|AAW30669.1| 2836|Caenorhabditis elegans Inositol trip... 28 4.4
AF036702-1|AAW30668.1| 2892|Caenorhabditis elegans Inositol trip... 28 4.4
>U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical
protein F41H10.3b protein.
Length = 1005
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 444 ICSHRQKSPSMTTTRTTEAYLSRGISFT 361
+CS +Q+S S+ T TE RG++FT
Sbjct: 46 VCSSKQRSKSLKNTFQTEVRALRGLNFT 73
>U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical
protein F41H10.3a protein.
Length = 1140
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 444 ICSHRQKSPSMTTTRTTEAYLSRGISFT 361
+CS +Q+S S+ T TE RG++FT
Sbjct: 46 VCSSKQRSKSLKNTFQTEVRALRGLNFT 73
>Z75533-3|CAA99822.1| 868|Caenorhabditis elegans Hypothetical
protein C54G4.4 protein.
Length = 868
Score = 28.7 bits (61), Expect = 3.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 311 WRCTELWHLFNSPTPCFR 258
+ C+ WHL NSP+P +R
Sbjct: 565 YECSNGWHLANSPSPSYR 582
>Z46381-9|CAI58660.1| 807|Caenorhabditis elegans Hypothetical
protein M01F1.4b protein.
Length = 807
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Frame = +2
Query: 380 LKYASVVRVVVILGLFCLWLQI--MLSASGGGMYRDGEELMNSNDTSEQV-LALVPPELH 550
+ YAS+ + G+F + + MLSA G +R EEL+ ++SE + +++PP +
Sbjct: 203 ISYASLYFGPLRAGVFGVSAAVLGMLSAGLIGGHRPSEELLEKENSSENLDESILPPNVE 262
Query: 551 KYL 559
K L
Sbjct: 263 KVL 265
>Z46381-8|CAA86517.2| 808|Caenorhabditis elegans Hypothetical
protein M01F1.4a protein.
Length = 808
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Frame = +2
Query: 380 LKYASVVRVVVILGLFCLWLQI--MLSASGGGMYRDGEELMNSNDTSEQV-LALVPPELH 550
+ YAS+ + G+F + + MLSA G +R EEL+ ++SE + +++PP +
Sbjct: 204 ISYASLYFGPLRAGVFGVSAAVLGMLSAGLIGGHRPSEELLEKENSSENLDESILPPNVE 263
Query: 551 KYL 559
K L
Sbjct: 264 KVL 266
>AF016688-6|AAB66074.2| 274|Caenorhabditis elegans Hypothetical
protein F18A12.2 protein.
Length = 274
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -3
Query: 481 IPIHSPARSRQHD-LQPQTEEPEYDDNTHDRSILEPW 374
IP SP S+Q + P+ EEP + D++I PW
Sbjct: 127 IPQGSPEASQQREPTPPKPEEPPNEPTWLDKTIYHPW 163
>AJ243182-1|CAB45863.1| 2857|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2857
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 575 SSGAPSDTCAARGGPGL 525
SSG PS+TC + G PGL
Sbjct: 2623 SSGIPSETCPSEGCPGL 2639
>AJ243181-1|CAB45862.1| 2836|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2836
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 575 SSGAPSDTCAARGGPGL 525
SSG PS+TC + G PGL
Sbjct: 2602 SSGIPSETCPSEGCPGL 2618
>AJ243180-1|CAB45861.1| 2892|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2892
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 575 SSGAPSDTCAARGGPGL 525
SSG PS+TC + G PGL
Sbjct: 2658 SSGIPSETCPSEGCPGL 2674
>AJ243179-1|CAB45860.1| 2846|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2846
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 575 SSGAPSDTCAARGGPGL 525
SSG PS+TC + G PGL
Sbjct: 2612 SSGIPSETCPSEGCPGL 2628
>AF168688-1|AAF05302.1| 2846|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2846
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 575 SSGAPSDTCAARGGPGL 525
SSG PS+TC + G PGL
Sbjct: 2612 SSGIPSETCPSEGCPGL 2628
>AF036702-4|AAK68365.1| 2857|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform e protein.
Length = 2857
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 575 SSGAPSDTCAARGGPGL 525
SSG PS+TC + G PGL
Sbjct: 2623 SSGIPSETCPSEGCPGL 2639
>AF036702-3|AAK68366.1| 2846|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform f protein.
Length = 2846
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 575 SSGAPSDTCAARGGPGL 525
SSG PS+TC + G PGL
Sbjct: 2612 SSGIPSETCPSEGCPGL 2628
>AF036702-2|AAW30669.1| 2836|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform d protein.
Length = 2836
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 575 SSGAPSDTCAARGGPGL 525
SSG PS+TC + G PGL
Sbjct: 2602 SSGIPSETCPSEGCPGL 2618
>AF036702-1|AAW30668.1| 2892|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform a protein.
Length = 2892
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 575 SSGAPSDTCAARGGPGL 525
SSG PS+TC + G PGL
Sbjct: 2658 SSGIPSETCPSEGCPGL 2674
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,778,761
Number of Sequences: 27780
Number of extensions: 252072
Number of successful extensions: 750
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -