Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11f08
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    26   0.24 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   1.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.3  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 533 PGLALVPTCRSNSSALLHPYTF 468
           PG+ ++P C   + A L PY +
Sbjct: 307 PGVTMIPACTCKAVACLDPYVY 328


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 367 VHSTDGAALILVSFPRTTDGAVLNYG 290
           V++T+  + + V+ PR  DG  L  G
Sbjct: 64  VYNTEQQSTVFVAIPRIQDGVPLTLG 89


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/24 (29%), Positives = 17/24 (70%)
 Frame = +2

Query: 440  QIMLSASGGGMYRDGEELMNSNDT 511
            ++++  SGGG+Y    ++ +S++T
Sbjct: 1118 KVIVIPSGGGIYTKDTKITSSSET 1141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,687
Number of Sequences: 438
Number of extensions: 2836
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)