Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11f08
         (597 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03970.1 68418.m00377 F-box family protein predicted proteins...    30   1.3  
At2g07719.1 68415.m00969 expressed protein                             29   1.8  
At2g23160.1 68415.m02767 F-box family protein contains Pfam PF00...    29   3.1  
At1g26620.1 68414.m03242 expressed protein ; expression supporte...    28   5.4  
At1g24290.1 68414.m03065 AAA-type ATPase family protein similar ...    28   5.4  
At5g45480.1 68418.m05587 expressed protein contains Pfam domain,...    27   7.2  
At4g32970.1 68417.m04690 expressed protein low similarity to SP|...    27   7.2  
At5g19500.1 68418.m02323 tryptophan/tyrosine permease family pro...    27   9.5  
At3g51330.1 68416.m05619 aspartyl protease family protein contai...    27   9.5  
At1g18485.1 68414.m02307 pentatricopeptide (PPR) repeat-containi...    27   9.5  

>At5g03970.1 68418.m00377 F-box family protein predicted proteins,
           Arabidopsis thaliana
          Length = 418

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/27 (48%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
 Frame = +2

Query: 488 ELMNSNDTSEQVLALVPPE-LHKYLTV 565
           E++NSNDT  ++L L+PPE ++K + V
Sbjct: 21  EVLNSNDTMCEILILLPPETIYKLILV 47


>At2g07719.1 68415.m00969 expressed protein
          Length = 161

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 391 SILEPWHLVHSTDGAALILVSF-PRTTDGAVLNYGIFSIL 275
           S L+PW L     G+ ++ +S   RT  G +L + ++S+L
Sbjct: 14  SFLDPWQLAAIFSGSCVLFISLEKRTLTGYMLTFILYSVL 53


>At2g23160.1 68415.m02767 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 395

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 377 VASRSLDRWRCTHLSFVSADNRWRCTELWHLFNSPTPC 264
           V S+S+ R+RC    + S   R   TEL+   +SP PC
Sbjct: 19  VPSKSVARFRCVSKPWASMIRRPYFTELFLTRSSPKPC 56


>At1g26620.1 68414.m03242 expressed protein ; expression supported
           by MPSS
          Length = 867

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -3

Query: 490 LFSIPIHSPARSR-QHDLQPQTEEPEYDDNTHDRSILEPWHLVHSTDGAAL 341
           L S+ + + AR+    +  P  E  E  DN+ D++  E W ++   DG ++
Sbjct: 579 LSSLSVKTKARTWIDLEAPPTLESEEEGDNSQDKTNEETWRMMQGQDGNSM 629


>At1g24290.1 68414.m03065 AAA-type ATPase family protein similar to
           Werner helicase interacting protein [Homo sapiens]
           GI:14349166; contains Pfam profiles PF00004: ATPase
           family associated with various cellular activities
           (AAA), PF00627: UBA/TS-N domain; contains
           ATP/GTP-binding site motif A (P-loop)
          Length = 525

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +2

Query: 449 LSASGGGMYRDGEELMNSNDTSEQVLALVPPELHKYLTVXPK 574
           L+A+GG   +   + + S+ +S Q  A + P+L ++L + PK
Sbjct: 18  LTATGGDSIQKATDWILSHRSSPQSTATLQPKLDRFLRLHPK 59


>At5g45480.1 68418.m05587 expressed protein contains Pfam domain,
           PF04578: Protein of unknown function, DUF594
          Length = 877

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 226 LNRILDLIIGKRKHGVGELKRCHNSVQRH 312
           LN IL+ I+G RK  V E   C+ + Q H
Sbjct: 380 LNWILENILGVRKLKVEEYDECYKNTQSH 408


>At4g32970.1 68417.m04690 expressed protein low similarity to
           SP|Q13061 Triadin {Homo sapiens}
          Length = 750

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +2

Query: 446 MLSASGGGMYRDGEELMNSNDTSEQVLALVPPELHKYLTVXPKNSSVN 589
           MLS     + +D E    S   +EQVL+    ++ KYLT   K SSV+
Sbjct: 352 MLSPFPPNVKKDDEVPQISRRQAEQVLSNCASQIKKYLTEAGKLSSVS 399


>At5g19500.1 68418.m02323 tryptophan/tyrosine permease family
           protein contains Pfam profile PF03222:
           Tryptophan/tyrosine permease family
          Length = 505

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 368 EMPRLKYASVVRVVVILGLFCLWLQIMLSA 457
           ++PR++ A V+   + LGLF +W  ++L +
Sbjct: 313 DLPRVRTAIVLGTAIPLGLFLVWDAVILGS 342


>At3g51330.1 68416.m05619 aspartyl protease family protein contains
           Eukaryotic and viral aspartyl proteases active site,
           PROSITE:PS00141
          Length = 529

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 478 GWRRADEFERHVGTSASPGPPRAAQVSDGAPEEL 579
           GW+R+D FE     S +P PP     S  A   L
Sbjct: 447 GWKRSDCFEDESLESTTPPPPETEAPSPSASTPL 480


>At1g18485.1 68414.m02307 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 970

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 140 KIKQDDILCYKIILVYVYC 196
           +++ DD+LC +II +Y  C
Sbjct: 115 RLRNDDVLCTRIITMYAMC 133


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,804,183
Number of Sequences: 28952
Number of extensions: 225572
Number of successful extensions: 597
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)