BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov11f07 (683 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB) 252 2e-67 At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB) 252 2e-67 At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA) si... 250 7e-67 At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC) 246 1e-65 At2g42650.1 68415.m05278 60S ribosomal protein-related similar t... 53 2e-07 At3g58660.1 68416.m06538 60S ribosomal protein-related contains ... 50 1e-06 At1g06380.1 68414.m00674 ribosomal protein-related similar to PB... 44 7e-05 At5g41880.1 68418.m05099 DNA primase small subunit family contai... 33 0.13 At2g42710.1 68415.m05289 ribosomal protein L1 family protein 33 0.13 At5g10610.1 68418.m01228 cytochrome P450 family protein similar ... 31 0.71 At1g08400.1 68414.m00929 chromosome structural maintenance prote... 30 1.2 At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related conta... 30 1.6 At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related conta... 29 2.2 At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related conta... 29 2.2 At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitam... 29 3.8 At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01... 29 3.8 At1g48980.1 68414.m05491 hypothetical protein 24 4.7 At4g18340.1 68417.m02721 glycosyl hydrolase family 17 protein si... 27 8.8 >At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB) Length = 216 Score = 252 bits (617), Expect = 2e-67 Identities = 119/209 (56%), Positives = 152/209 (72%) Frame = +3 Query: 57 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 236 SK+ + + E + + S++KKRNF+ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPK Sbjct: 2 SKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61 Query: 237 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 416 M++C+LGD QH +EA+ + + M SES+IKQIPR Sbjct: 62 MKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIPR 121 Query: 417 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 596 LLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+ VAVG++ M +L QN Sbjct: 122 LLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQN 181 Query: 597 VHLSINFLVSLLKKHWQNVRSLHMKSTMG 683 V +S+NFLVSLLKK+WQNVR L++KSTMG Sbjct: 182 VQMSVNFLVSLLKKNWQNVRCLYLKSTMG 210 >At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB) Length = 216 Score = 252 bits (617), Expect = 2e-67 Identities = 119/209 (56%), Positives = 152/209 (72%) Frame = +3 Query: 57 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 236 SK+ + + E + + S++KKRNF+ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPK Sbjct: 2 SKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61 Query: 237 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 416 M++C+LGD QH +EA+ + + M SES+IKQIPR Sbjct: 62 MKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIPR 121 Query: 417 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 596 LLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+ VAVG++ M +L QN Sbjct: 122 LLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQN 181 Query: 597 VHLSINFLVSLLKKHWQNVRSLHMKSTMG 683 V +S+NFLVSLLKK+WQNVR L++KSTMG Sbjct: 182 VQMSVNFLVSLLKKNWQNVRCLYLKSTMG 210 >At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA) similar to 60S ribosomal protein L10A GB:AAC73045 GI:3860277 from [Arabidopsis thaliana] Length = 216 Score = 250 bits (612), Expect = 7e-67 Identities = 117/209 (55%), Positives = 151/209 (72%) Frame = +3 Query: 57 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 236 SK+ + + E + + S+ KKRNF+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPK Sbjct: 2 SKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61 Query: 237 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 416 M++C+LGD QH +EA+ + + M SES+IKQIPR Sbjct: 62 MKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPR 121 Query: 417 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 596 LLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+ VAVG++ M ++ QN Sbjct: 122 LLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQN 181 Query: 597 VHLSINFLVSLLKKHWQNVRSLHMKSTMG 683 V +S+NFLVSLLKK+WQNVR L++KSTMG Sbjct: 182 VQMSVNFLVSLLKKNWQNVRCLYLKSTMG 210 >At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC) Length = 217 Score = 246 bits (602), Expect = 1e-65 Identities = 115/210 (54%), Positives = 152/210 (72%), Gaps = 1/210 (0%) Frame = +3 Query: 57 SKVSRDTLYECVNAVLQSSKDKK-RNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 233 SK+ + + E +++++ K+ K RNF ET+ELQIGLKNYDPQKDKRFSG+VKL ++PRP Sbjct: 2 SKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRP 61 Query: 234 KMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIP 413 KM++C+LGD QH +EA+ + + M SES+IKQIP Sbjct: 62 KMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQIP 121 Query: 414 RLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQ 593 RLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+ VAVG++ M ++ Q Sbjct: 122 RLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQ 181 Query: 594 NVHLSINFLVSLLKKHWQNVRSLHMKSTMG 683 NV +S+NFLVSLLKK+WQNVR L++KSTMG Sbjct: 182 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMG 211 >At2g42650.1 68415.m05278 60S ribosomal protein-related similar to PBK1 protein (GI:3668141) [Homo sapiens]; weak similarity to 60S ribosomal protein L10a. (Swiss-Prot:Q9SW75) [Chlamydomonas reinhardtii] Length = 372 Score = 53.2 bits (122), Expect = 2e-07 Identities = 25/93 (26%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Frame = +3 Query: 396 LIKQIPRLLGPGLNKAGKFPGLLSHQE-SMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDM 572 +I +P+L+G ++ K P + + + ++I++ G F M+ C ++ V + M Sbjct: 137 VIPMLPKLIGKKFFQSKKTPVAIDLKHMNWKEQIEKACGAAMFFMRTGSCSAIKVAKLSM 196 Query: 573 TPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 671 D++ +NV ++N +V +L W+ +RSLH+K Sbjct: 197 ESDDIVENVTATLNGVVDVLPSRWKYIRSLHLK 229 >At3g58660.1 68416.m06538 60S ribosomal protein-related contains weak similarity to 60S ribosomal protein L10A (CSA-19) (NEDD-6) (Swiss-Prot:P53026) [Mus musculus] Length = 446 Score = 50.4 bits (115), Expect = 1e-06 Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Frame = +3 Query: 396 LIKQIPRLLGPGLNKAGKFPGLLS-HQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDM 572 +I +PR++G + K P L + +I++ G+ F ++ C + VG + M Sbjct: 157 IIPLLPRVIGKKFFTSKKIPVALDLKHRNWKHQIEKACGSAMFFIRTGTCSVIKVGKLSM 216 Query: 573 TPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 671 E+ +NV ++N LV L W VRSLH+K Sbjct: 217 DICEITENVMATLNGLVEFLPNKWTYVRSLHLK 249 >At1g06380.1 68414.m00674 ribosomal protein-related similar to PBK1 protein (GI:3668141) {Homo sapiens}; weakly similar to 60S ribosomal protein L10a. (SP:Q963B6) [Fall armyworm] {Spodoptera frugiperda} Length = 254 Score = 44.4 bits (100), Expect = 7e-05 Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 1/93 (1%) Frame = +3 Query: 396 LIKQIPRLLGPGLNKAGKFPGLLSHQE-SMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDM 572 L+ +P+LLG K K P ++ + S ++I++ + F + C V V + M Sbjct: 148 LMPMLPKLLGKEFVKKNKTPIAINLRHGSWKEQIEKACESALFFVGTGTCSVVKVAKLSM 207 Query: 573 TPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 671 +E+A+NV ++N + L+ W+NV+ H+K Sbjct: 208 GRNEIAENVVAAMNGIGDLVPGRWKNVKLFHLK 240 >At5g41880.1 68418.m05099 DNA primase small subunit family contains Pfam profile: PF01896 DNA primase small subunit Length = 407 Score = 33.5 bits (73), Expect = 0.13 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 4/94 (4%) Frame = +3 Query: 36 SLTNKMSSKVSRDTLYECVNAVLQSSKDKK---RNFLETVELQIGLKNYDPQKDKRFSGT 206 S + +S + + +E + LQS ++K R +E + D + K+ + Sbjct: 275 SARSSLSEEATSLLRWEQLKKALQSKRNKALSLRTCVEEIVFTFTYPRIDLEVSKQMNHL 334 Query: 207 VKLKYIPRPKM-QVCVLGDQQHCDEAKTLNVPCM 305 +K + PK +VCV D +CDE L VP + Sbjct: 335 LKAPFCVHPKTGRVCVPIDPNNCDEFDPLAVPTL 368 >At2g42710.1 68415.m05289 ribosomal protein L1 family protein Length = 415 Score = 33.5 bits (73), Expect = 0.13 Identities = 46/222 (20%), Positives = 86/222 (38%), Gaps = 10/222 (4%) Frame = +3 Query: 48 KMSSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIP 227 K K + +++ + A+ + + K F ET+E + L + + GT+ L + Sbjct: 177 KPELKHGKKPIFDLMEAIREIKGNAKAKFDETLEAHVRLGIEKGRSELIVRGTLALPHSV 236 Query: 228 RPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQ 407 + ++V + ++AK + + + Sbjct: 237 KKDVKVAFFAEGADAEDAKAAGADVVGGLELIEEILKSGKIDFDRCLATPKMMPR--VYK 294 Query: 408 IPRLLGPGLNKAGKFPGLL--SHQESMTQKIDEVK-GTIKFQMKKVLCLSVAVGHVDMTP 578 I R+L N G P S + +T+ + + K G KF+M K L V +G + + Sbjct: 295 ISRIL----NNHGLMPNPKQGSVTKDVTKAVKDAKAGHTKFRMDKTSILHVPLGKMSFSE 350 Query: 579 DELAQNVHLSINFLV-----SLLK--KHWQNVRSLHMKSTMG 683 + L +NV +N L+ L K K+ V + H+ STMG Sbjct: 351 EALRENVGAFMNALLLAKPAGLKKTSKYAGYVNAFHLCSTMG 392 >At5g10610.1 68418.m01228 cytochrome P450 family protein similar to Cytochrome P450 91A1 (SP:Q9FG65) [Arabidopsis thaliana]; similar to cytochrome P450, Helianthus tuberosus, EMBL:HTCYP81L Length = 500 Score = 31.1 bits (67), Expect = 0.71 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +3 Query: 135 LETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVC 248 L V + G+K DP+ +KRF KL++ M VC Sbjct: 185 LRLVSGKRGVKKSDPESEKRFLDDFKLRFFSSMSMNVC 222 >At1g08400.1 68414.m00929 chromosome structural maintenance protein-related contains weak similarity to RAD50-interacting protein 1 [Homo sapiens] gi|11967435|gb|AAG42101 Length = 804 Score = 30.3 bits (65), Expect = 1.2 Identities = 15/47 (31%), Positives = 26/47 (55%) Frame = +3 Query: 54 SSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKR 194 +SKV + N +L DKK ++ ++ L GL+ ++ QK+KR Sbjct: 232 TSKVEHGEVDSIPNPLLLMQGDKKESYSQSFLLLCGLQQHNTQKEKR 278 >At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related contains weak similarity to 2-phosphoglycerate kinase (GI:467751) [Methanothermus fervidus] Length = 738 Score = 29.9 bits (64), Expect = 1.6 Identities = 10/19 (52%), Positives = 16/19 (84%) Frame = +3 Query: 585 LAQNVHLSINFLVSLLKKH 641 + + VHLS+NF++ L+KKH Sbjct: 322 IVEGVHLSLNFVMGLMKKH 340 >At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related contains weak similarity to 2-phosphoglycerate kinase (GI:467751) [Methanothermus fervidus] Length = 698 Score = 29.5 bits (63), Expect = 2.2 Identities = 10/19 (52%), Positives = 16/19 (84%) Frame = +3 Query: 585 LAQNVHLSINFLVSLLKKH 641 + + VHLS+NF++ L+KKH Sbjct: 279 VVEGVHLSLNFVMGLMKKH 297 >At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related contains weak similarity to 2-phosphoglycerate kinase (GI:467751) [Methanothermus fervidus] Length = 717 Score = 29.5 bits (63), Expect = 2.2 Identities = 10/19 (52%), Positives = 16/19 (84%) Frame = +3 Query: 585 LAQNVHLSINFLVSLLKKH 641 + + VHLS+NF++ L+KKH Sbjct: 298 VVEGVHLSLNFVMGLMKKH 316 >At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) identical to SP|Q94FY7 Tocopherol cyclase, chloroplast precursor (Vitamin E deficient 1) (Sucrose export defective 1) {Arabidopsis thaliana} Length = 488 Score = 28.7 bits (61), Expect = 3.8 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = -2 Query: 235 FGRGMYFSFTVPEKRLSFC 179 F G YF ++PEKR SFC Sbjct: 91 FFEGWYFRVSIPEKRESFC 109 >At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01612: reticulocyte binding protein; contains TIGRFAM TIGR00864: polycystin cation channel protein; similar to fimbriae-associated protein Fap1 [Streptococcus parasanguinis] (GI:3929312) Length = 1498 Score = 28.7 bits (61), Expect = 3.8 Identities = 18/59 (30%), Positives = 25/59 (42%) Frame = -3 Query: 213 ALQCRRNACPSVGHSSSDQFEALQSPKSYVSCP*RIEERHSRTRRACHETL*TTFCLSE 37 A+ + HS + EALQS S V +++ SR R H TT L+E Sbjct: 871 AVMAEERSARKAMHSKRQEIEALQSMISRVKSAASVDDIDSRVRNMEHTMQHTTLSLNE 929 >At1g48980.1 68414.m05491 hypothetical protein Length = 264 Score = 24.2 bits (50), Expect(2) = 4.7 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = -1 Query: 599 HILSKLIRSHVHMANCYRKTQHLLHLELNGSLDFINLL 486 H LS+ R+H+ N RK + ++NG L +N+L Sbjct: 66 HKLSRKQRTHIRAINVKRKRDFVCLEKVNGEL--VNIL 101 Score = 22.6 bits (46), Expect(2) = 4.7 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = -1 Query: 638 FLEQ*HKEVDGKMHILSKLIRS 573 F+ Q E+ K+++LSK IRS Sbjct: 6 FIRQSELEIASKVNLLSKRIRS 27 >At4g18340.1 68417.m02721 glycosyl hydrolase family 17 protein similar to elicitor inducible chitinase Nt-SubE76 GI:11071974 from [Nicotiana tabacum] Length = 397 Score = 27.5 bits (58), Expect = 8.8 Identities = 14/79 (17%), Positives = 39/79 (49%) Frame = +3 Query: 54 SSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 233 S ++++ +Y+ +L + + + T+E Q+ DPQ+ ++ + Y+P Sbjct: 57 SLRITKTRIYDTNPQILSAFANSNIEIIVTIENQVLPLLQDPQQATQWVDSHIKPYVPAT 116 Query: 234 KMQVCVLGDQQHCDEAKTL 290 ++ ++G++ D+ +L Sbjct: 117 RITGIMVGNELFTDDDSSL 135 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,409,903 Number of Sequences: 28952 Number of extensions: 323005 Number of successful extensions: 827 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 796 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 823 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1447936096 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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