Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11f07
(683 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB) 252 2e-67
At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB) 252 2e-67
At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA) si... 250 7e-67
At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC) 246 1e-65
At2g42650.1 68415.m05278 60S ribosomal protein-related similar t... 53 2e-07
At3g58660.1 68416.m06538 60S ribosomal protein-related contains ... 50 1e-06
At1g06380.1 68414.m00674 ribosomal protein-related similar to PB... 44 7e-05
At5g41880.1 68418.m05099 DNA primase small subunit family contai... 33 0.13
At2g42710.1 68415.m05289 ribosomal protein L1 family protein 33 0.13
At5g10610.1 68418.m01228 cytochrome P450 family protein similar ... 31 0.71
At1g08400.1 68414.m00929 chromosome structural maintenance prote... 30 1.2
At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related conta... 30 1.6
At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related conta... 29 2.2
At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related conta... 29 2.2
At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitam... 29 3.8
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01... 29 3.8
At1g48980.1 68414.m05491 hypothetical protein 24 4.7
At4g18340.1 68417.m02721 glycosyl hydrolase family 17 protein si... 27 8.8
>At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 252 bits (617), Expect = 2e-67
Identities = 119/209 (56%), Positives = 152/209 (72%)
Frame = +3
Query: 57 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 236
SK+ + + E + + S++KKRNF+ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 237 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 416
M++C+LGD QH +EA+ + + M SES+IKQIPR
Sbjct: 62 MKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIPR 121
Query: 417 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 596
LLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+ VAVG++ M +L QN
Sbjct: 122 LLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQN 181
Query: 597 VHLSINFLVSLLKKHWQNVRSLHMKSTMG 683
V +S+NFLVSLLKK+WQNVR L++KSTMG
Sbjct: 182 VQMSVNFLVSLLKKNWQNVRCLYLKSTMG 210
>At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 252 bits (617), Expect = 2e-67
Identities = 119/209 (56%), Positives = 152/209 (72%)
Frame = +3
Query: 57 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 236
SK+ + + E + + S++KKRNF+ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 237 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 416
M++C+LGD QH +EA+ + + M SES+IKQIPR
Sbjct: 62 MKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIPR 121
Query: 417 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 596
LLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+ VAVG++ M +L QN
Sbjct: 122 LLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQN 181
Query: 597 VHLSINFLVSLLKKHWQNVRSLHMKSTMG 683
V +S+NFLVSLLKK+WQNVR L++KSTMG
Sbjct: 182 VQMSVNFLVSLLKKNWQNVRCLYLKSTMG 210
>At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA)
similar to 60S ribosomal protein L10A GB:AAC73045
GI:3860277 from [Arabidopsis thaliana]
Length = 216
Score = 250 bits (612), Expect = 7e-67
Identities = 117/209 (55%), Positives = 151/209 (72%)
Frame = +3
Query: 57 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 236
SK+ + + E + + S+ KKRNF+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 237 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 416
M++C+LGD QH +EA+ + + M SES+IKQIPR
Sbjct: 62 MKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPR 121
Query: 417 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 596
LLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+ VAVG++ M ++ QN
Sbjct: 122 LLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQN 181
Query: 597 VHLSINFLVSLLKKHWQNVRSLHMKSTMG 683
V +S+NFLVSLLKK+WQNVR L++KSTMG
Sbjct: 182 VQMSVNFLVSLLKKNWQNVRCLYLKSTMG 210
>At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC)
Length = 217
Score = 246 bits (602), Expect = 1e-65
Identities = 115/210 (54%), Positives = 152/210 (72%), Gaps = 1/210 (0%)
Frame = +3
Query: 57 SKVSRDTLYECVNAVLQSSKDKK-RNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 233
SK+ + + E +++++ K+ K RNF ET+ELQIGLKNYDPQKDKRFSG+VKL ++PRP
Sbjct: 2 SKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRP 61
Query: 234 KMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIP 413
KM++C+LGD QH +EA+ + + M SES+IKQIP
Sbjct: 62 KMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQIP 121
Query: 414 RLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQ 593
RLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+ VAVG++ M ++ Q
Sbjct: 122 RLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQ 181
Query: 594 NVHLSINFLVSLLKKHWQNVRSLHMKSTMG 683
NV +S+NFLVSLLKK+WQNVR L++KSTMG
Sbjct: 182 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMG 211
>At2g42650.1 68415.m05278 60S ribosomal protein-related similar to
PBK1 protein (GI:3668141) [Homo sapiens]; weak
similarity to 60S ribosomal protein L10a.
(Swiss-Prot:Q9SW75) [Chlamydomonas reinhardtii]
Length = 372
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/93 (26%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Frame = +3
Query: 396 LIKQIPRLLGPGLNKAGKFPGLLSHQE-SMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDM 572
+I +P+L+G ++ K P + + + ++I++ G F M+ C ++ V + M
Sbjct: 137 VIPMLPKLIGKKFFQSKKTPVAIDLKHMNWKEQIEKACGAAMFFMRTGSCSAIKVAKLSM 196
Query: 573 TPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 671
D++ +NV ++N +V +L W+ +RSLH+K
Sbjct: 197 ESDDIVENVTATLNGVVDVLPSRWKYIRSLHLK 229
>At3g58660.1 68416.m06538 60S ribosomal protein-related contains
weak similarity to 60S ribosomal protein L10A (CSA-19)
(NEDD-6) (Swiss-Prot:P53026) [Mus musculus]
Length = 446
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Frame = +3
Query: 396 LIKQIPRLLGPGLNKAGKFPGLLS-HQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDM 572
+I +PR++G + K P L + +I++ G+ F ++ C + VG + M
Sbjct: 157 IIPLLPRVIGKKFFTSKKIPVALDLKHRNWKHQIEKACGSAMFFIRTGTCSVIKVGKLSM 216
Query: 573 TPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 671
E+ +NV ++N LV L W VRSLH+K
Sbjct: 217 DICEITENVMATLNGLVEFLPNKWTYVRSLHLK 249
>At1g06380.1 68414.m00674 ribosomal protein-related similar to PBK1
protein (GI:3668141) {Homo sapiens}; weakly similar to
60S ribosomal protein L10a. (SP:Q963B6) [Fall armyworm]
{Spodoptera frugiperda}
Length = 254
Score = 44.4 bits (100), Expect = 7e-05
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Frame = +3
Query: 396 LIKQIPRLLGPGLNKAGKFPGLLSHQE-SMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDM 572
L+ +P+LLG K K P ++ + S ++I++ + F + C V V + M
Sbjct: 148 LMPMLPKLLGKEFVKKNKTPIAINLRHGSWKEQIEKACESALFFVGTGTCSVVKVAKLSM 207
Query: 573 TPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 671
+E+A+NV ++N + L+ W+NV+ H+K
Sbjct: 208 GRNEIAENVVAAMNGIGDLVPGRWKNVKLFHLK 240
>At5g41880.1 68418.m05099 DNA primase small subunit family contains
Pfam profile: PF01896 DNA primase small subunit
Length = 407
Score = 33.5 bits (73), Expect = 0.13
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = +3
Query: 36 SLTNKMSSKVSRDTLYECVNAVLQSSKDKK---RNFLETVELQIGLKNYDPQKDKRFSGT 206
S + +S + + +E + LQS ++K R +E + D + K+ +
Sbjct: 275 SARSSLSEEATSLLRWEQLKKALQSKRNKALSLRTCVEEIVFTFTYPRIDLEVSKQMNHL 334
Query: 207 VKLKYIPRPKM-QVCVLGDQQHCDEAKTLNVPCM 305
+K + PK +VCV D +CDE L VP +
Sbjct: 335 LKAPFCVHPKTGRVCVPIDPNNCDEFDPLAVPTL 368
>At2g42710.1 68415.m05289 ribosomal protein L1 family protein
Length = 415
Score = 33.5 bits (73), Expect = 0.13
Identities = 46/222 (20%), Positives = 86/222 (38%), Gaps = 10/222 (4%)
Frame = +3
Query: 48 KMSSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIP 227
K K + +++ + A+ + + K F ET+E + L + + GT+ L +
Sbjct: 177 KPELKHGKKPIFDLMEAIREIKGNAKAKFDETLEAHVRLGIEKGRSELIVRGTLALPHSV 236
Query: 228 RPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQ 407
+ ++V + ++AK + + +
Sbjct: 237 KKDVKVAFFAEGADAEDAKAAGADVVGGLELIEEILKSGKIDFDRCLATPKMMPR--VYK 294
Query: 408 IPRLLGPGLNKAGKFPGLL--SHQESMTQKIDEVK-GTIKFQMKKVLCLSVAVGHVDMTP 578
I R+L N G P S + +T+ + + K G KF+M K L V +G + +
Sbjct: 295 ISRIL----NNHGLMPNPKQGSVTKDVTKAVKDAKAGHTKFRMDKTSILHVPLGKMSFSE 350
Query: 579 DELAQNVHLSINFLV-----SLLK--KHWQNVRSLHMKSTMG 683
+ L +NV +N L+ L K K+ V + H+ STMG
Sbjct: 351 EALRENVGAFMNALLLAKPAGLKKTSKYAGYVNAFHLCSTMG 392
>At5g10610.1 68418.m01228 cytochrome P450 family protein similar to
Cytochrome P450 91A1 (SP:Q9FG65) [Arabidopsis
thaliana]; similar to cytochrome P450, Helianthus
tuberosus, EMBL:HTCYP81L
Length = 500
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 135 LETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVC 248
L V + G+K DP+ +KRF KL++ M VC
Sbjct: 185 LRLVSGKRGVKKSDPESEKRFLDDFKLRFFSSMSMNVC 222
>At1g08400.1 68414.m00929 chromosome structural maintenance
protein-related contains weak similarity to
RAD50-interacting protein 1 [Homo sapiens]
gi|11967435|gb|AAG42101
Length = 804
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 54 SSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKR 194
+SKV + N +L DKK ++ ++ L GL+ ++ QK+KR
Sbjct: 232 TSKVEHGEVDSIPNPLLLMQGDKKESYSQSFLLLCGLQQHNTQKEKR 278
>At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 738
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3
Query: 585 LAQNVHLSINFLVSLLKKH 641
+ + VHLS+NF++ L+KKH
Sbjct: 322 IVEGVHLSLNFVMGLMKKH 340
>At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 698
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3
Query: 585 LAQNVHLSINFLVSLLKKH 641
+ + VHLS+NF++ L+KKH
Sbjct: 279 VVEGVHLSLNFVMGLMKKH 297
>At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 717
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3
Query: 585 LAQNVHLSINFLVSLLKKH 641
+ + VHLS+NF++ L+KKH
Sbjct: 298 VVEGVHLSLNFVMGLMKKH 316
>At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitamin
E deficient 1 (VTE1) / sucrose export defective 1 (SXD1)
identical to SP|Q94FY7 Tocopherol cyclase, chloroplast
precursor (Vitamin E deficient 1) (Sucrose export
defective 1) {Arabidopsis thaliana}
Length = 488
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 235 FGRGMYFSFTVPEKRLSFC 179
F G YF ++PEKR SFC
Sbjct: 91 FFEGWYFRVSIPEKRESFC 109
>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; contains TIGRFAM TIGR00864:
polycystin cation channel protein; similar to
fimbriae-associated protein Fap1 [Streptococcus
parasanguinis] (GI:3929312)
Length = 1498
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = -3
Query: 213 ALQCRRNACPSVGHSSSDQFEALQSPKSYVSCP*RIEERHSRTRRACHETL*TTFCLSE 37
A+ + HS + EALQS S V +++ SR R H TT L+E
Sbjct: 871 AVMAEERSARKAMHSKRQEIEALQSMISRVKSAASVDDIDSRVRNMEHTMQHTTLSLNE 929
>At1g48980.1 68414.m05491 hypothetical protein
Length = 264
Score = 24.2 bits (50), Expect(2) = 4.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 599 HILSKLIRSHVHMANCYRKTQHLLHLELNGSLDFINLL 486
H LS+ R+H+ N RK + ++NG L +N+L
Sbjct: 66 HKLSRKQRTHIRAINVKRKRDFVCLEKVNGEL--VNIL 101
Score = 22.6 bits (46), Expect(2) = 4.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 638 FLEQ*HKEVDGKMHILSKLIRS 573
F+ Q E+ K+++LSK IRS
Sbjct: 6 FIRQSELEIASKVNLLSKRIRS 27
>At4g18340.1 68417.m02721 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 397
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/79 (17%), Positives = 39/79 (49%)
Frame = +3
Query: 54 SSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 233
S ++++ +Y+ +L + + + T+E Q+ DPQ+ ++ + Y+P
Sbjct: 57 SLRITKTRIYDTNPQILSAFANSNIEIIVTIENQVLPLLQDPQQATQWVDSHIKPYVPAT 116
Query: 234 KMQVCVLGDQQHCDEAKTL 290
++ ++G++ D+ +L
Sbjct: 117 RITGIMVGNELFTDDDSSL 135
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,409,903
Number of Sequences: 28952
Number of extensions: 323005
Number of successful extensions: 827
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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