Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11f06
(512 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.41
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 28 0.94
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 26 3.8
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 26 3.8
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 25 5.0
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 6.7
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 25 6.7
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 8.8
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 25 8.8
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.1 bits (62), Expect = 0.41
Identities = 19/96 (19%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Frame = +2
Query: 188 SALGASNGGSFAVTSVSPCAPTGIALSSQNIYEGPVGV-AGNLPFLGTAAVEETFKSIGV 364
S++ +S S + S + + + +SS +I G + + ++ + ++ T+ S +
Sbjct: 612 SSISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSSLSTYSSSVI 671
Query: 365 GHISSQCGDGVVAIRAESPVSAITPSPVPAVRGVVN 472
S+ I + SPV++ + SP+P+ +V+
Sbjct: 672 PSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVS 707
>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
Ran1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 470
Score = 27.9 bits (59), Expect = 0.94
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Frame = -2
Query: 454 CRHRAW---CNSRDGTFSSYSHDP 392
C+ W C+ DGT+ SY H+P
Sbjct: 234 CKRNPWKRACSQTDGTYRSYVHNP 257
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = -2
Query: 451 RHRAWCNSRDGTFSSYSHDPVPTLRRYMANTNGLEGFFDGSSS 323
R A+ N + F+++ HD +L +N + G F +S
Sbjct: 57 RRIAFLNRKQALFNAFMHDSSSSLNTMESNIEKVNGLFPNDNS 99
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 25.8 bits (54), Expect = 3.8
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Frame = +2
Query: 383 CGDGVVAIRAE-SPVSAITPSP-VPAVR---GVVNGLLGQGTECGCA 508
CG+ ++ AE +P+SA+ + VP GV+N L G G CG A
Sbjct: 187 CGNTIILKTAELTPLSALCLTKFVPECGFPPGVINVLSGDGRRCGNA 233
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 25.4 bits (53), Expect = 5.0
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = -3
Query: 483 PSSPLTTPRTAGTGLGVIAETGLSALIATTPSPH 382
PS+P + P + G G + +A + +P+P+
Sbjct: 1096 PSNPASNPPSTGFSFGAATPSAFNASASQSPAPN 1129
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 25.0 bits (52), Expect = 6.7
Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 4/98 (4%)
Frame = +2
Query: 182 TNSALGASNGGSFAVTSVSPCAPTGIALS----SQNIYEGPVGVAGNLPFLGTAAVEETF 349
TN+A S GG F + + A TG + S + + G G G L G++ T
Sbjct: 102 TNNATNPSGGGLFGSNTANNNANTGTSFSFGSNAGSTGFGSQGTGGGL--FGSSTTPATT 159
Query: 350 KSIGVGHISSQCGDGVVAIRAESPVSAITPSPVPAVRG 463
+ G S + V +P A+T P G
Sbjct: 160 NAFGTSGFVSSNANAVNG--TANPPYAVTSEKDPQTNG 195
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -3
Query: 351 LKVSSTAAVPRKGRLPATPTGPS 283
LK S PR+GR P PT S
Sbjct: 230 LKRQSNTGKPRRGRAPNNPTSDS 252
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 24.6 bits (51), Expect = 8.8
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -1
Query: 245 HMGSRWSLRNFLH*TLPELNSLQGLLRH 162
H G W L N+ + L ++G+L H
Sbjct: 1484 HDGKLWQLNNYRVDVIQALGGVEGILEH 1511
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 24.6 bits (51), Expect = 8.8
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 10 FLGNN-VCQILRSSRGRTSNIRSQSMLGSWLVRGPGRRRTGFQLLVQPL 153
F+G+ V + R R R N R + + P RRTGF+L+V+ L
Sbjct: 62 FMGSRIVVEPARGERRRRENFRESAAS-----KYPRPRRTGFRLIVENL 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,133,621
Number of Sequences: 5004
Number of extensions: 43554
Number of successful extensions: 104
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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