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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11f06
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.41 
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    28   0.94 
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    26   3.8  
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    26   3.8  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   5.0  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   6.7  
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    25   6.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   8.8  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    25   8.8  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.1 bits (62), Expect = 0.41
 Identities = 19/96 (19%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
 Frame = +2

Query: 188 SALGASNGGSFAVTSVSPCAPTGIALSSQNIYEGPVGV-AGNLPFLGTAAVEETFKSIGV 364
           S++ +S   S  + S    + + + +SS +I  G   + + ++  +  ++   T+ S  +
Sbjct: 612 SSISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSSLSTYSSSVI 671

Query: 365 GHISSQCGDGVVAIRAESPVSAITPSPVPAVRGVVN 472
              S+        I + SPV++ + SP+P+   +V+
Sbjct: 672 PSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVS 707


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 27.9 bits (59), Expect = 0.94
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
 Frame = -2

Query: 454 CRHRAW---CNSRDGTFSSYSHDP 392
           C+   W   C+  DGT+ SY H+P
Sbjct: 234 CKRNPWKRACSQTDGTYRSYVHNP 257


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -2

Query: 451 RHRAWCNSRDGTFSSYSHDPVPTLRRYMANTNGLEGFFDGSSS 323
           R  A+ N +   F+++ HD   +L    +N   + G F   +S
Sbjct: 57  RRIAFLNRKQALFNAFMHDSSSSLNTMESNIEKVNGLFPNDNS 99


>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
 Frame = +2

Query: 383 CGDGVVAIRAE-SPVSAITPSP-VPAVR---GVVNGLLGQGTECGCA 508
           CG+ ++   AE +P+SA+  +  VP      GV+N L G G  CG A
Sbjct: 187 CGNTIILKTAELTPLSALCLTKFVPECGFPPGVINVLSGDGRRCGNA 233


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -3

Query: 483  PSSPLTTPRTAGTGLGVIAETGLSALIATTPSPH 382
            PS+P + P + G   G    +  +A  + +P+P+
Sbjct: 1096 PSNPASNPPSTGFSFGAATPSAFNASASQSPAPN 1129


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 4/98 (4%)
 Frame = +2

Query: 182 TNSALGASNGGSFAVTSVSPCAPTGIALS----SQNIYEGPVGVAGNLPFLGTAAVEETF 349
           TN+A   S GG F   + +  A TG + S    + +   G  G  G L   G++    T 
Sbjct: 102 TNNATNPSGGGLFGSNTANNNANTGTSFSFGSNAGSTGFGSQGTGGGL--FGSSTTPATT 159

Query: 350 KSIGVGHISSQCGDGVVAIRAESPVSAITPSPVPAVRG 463
            + G     S   + V      +P  A+T    P   G
Sbjct: 160 NAFGTSGFVSSNANAVNG--TANPPYAVTSEKDPQTNG 195


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 351 LKVSSTAAVPRKGRLPATPTGPS 283
           LK  S    PR+GR P  PT  S
Sbjct: 230 LKRQSNTGKPRRGRAPNNPTSDS 252


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 245  HMGSRWSLRNFLH*TLPELNSLQGLLRH 162
            H G  W L N+    +  L  ++G+L H
Sbjct: 1484 HDGKLWQLNNYRVDVIQALGGVEGILEH 1511


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 10  FLGNN-VCQILRSSRGRTSNIRSQSMLGSWLVRGPGRRRTGFQLLVQPL 153
           F+G+  V +  R  R R  N R  +       + P  RRTGF+L+V+ L
Sbjct: 62  FMGSRIVVEPARGERRRRENFRESAAS-----KYPRPRRTGFRLIVENL 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,133,621
Number of Sequences: 5004
Number of extensions: 43554
Number of successful extensions: 104
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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