Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11f06
(512 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0218 + 1856104-1856700,1856814-1857452 31 0.41
06_01_0366 - 2632115-2632180,2632359-2632470,2632736-2634168 31 0.72
12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-78... 29 2.2
04_01_0154 - 1775693-1775942,1776834-1777588 28 3.8
11_06_0365 - 22742886-22744223 28 5.1
11_06_0362 - 22723104-22724441 28 5.1
06_02_0064 + 11062798-11063568,11064212-11064261,11064354-110645... 28 5.1
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336... 28 5.1
05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364... 28 5.1
07_03_1004 + 23244479-23244648,23245104-23245276,23245535-232456... 27 6.7
05_05_0017 + 21546434-21546841 27 6.7
01_05_0791 + 25267885-25267930,25268258-25268713,25268802-252688... 27 6.7
08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671 27 8.8
03_02_0477 - 8770905-8770985,8771164-8771361,8771939-8772025,877... 27 8.8
01_01_1143 - 9064210-9065682 27 8.8
01_01_0219 + 1863478-1864041,1864459-1865109 27 8.8
>01_01_0218 + 1856104-1856700,1856814-1857452
Length = 411
Score = 31.5 bits (68), Expect = 0.41
Identities = 17/63 (26%), Positives = 25/63 (39%)
Frame = -3
Query: 477 SPLTTPRTAGTGLGVIAETGLSALIATTPSPH*DDIWPTPMDLKVSSTAAVPRKGRLPAT 298
SPL +P + T + A +PSP +WP +A++P PA
Sbjct: 41 SPLLSPMLLSVSSLAPSSTPMPTPTAPSPSPETPCVWPPSPPSPTDPSASMPSPTERPAA 100
Query: 297 PTG 289
P G
Sbjct: 101 PMG 103
>06_01_0366 - 2632115-2632180,2632359-2632470,2632736-2634168
Length = 536
Score = 30.7 bits (66), Expect = 0.72
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 371 ISSQCGDGVVAIRAESPVSAITPSPVPAVRGVVNGLLGQ 487
+SS G+ V ESPV AIT SP+ V + +G+
Sbjct: 302 VSSYLGNVVTYASRESPVEAITSSPLADVAAMAGAAIGE 340
>12_01_0101 -
779047-779298,779459-779711,779857-780005,780033-780281,
780377-780571,780681-780788,780935-781156,781669-781986,
781988-782615,783059-783135,783161-783267,783491-783619,
783763-783820,783902-783984,784458-784539,784617-784693,
784827-784910,784999-785068,785146-785234,785319-786008,
786485-786797
Length = 1410
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Frame = +1
Query: 298 CGRQSTFPWNCCRRRNLQVHWCW----PYIVSMWGRGRGYKS*KSR 423
C R +F W +++N H CW P+ W R R + S + R
Sbjct: 615 CARVQSFAWFLRKKKNQAFHTCWWKRMPFTSINWLRDRLFTSIRRR 660
>04_01_0154 - 1775693-1775942,1776834-1777588
Length = 334
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 40 RSSRGRTSNIRSQSMLGSWLVRGPGRRRTGFQ 135
R +RG R + SWL+ G GRRR+G +
Sbjct: 180 RGARGSWRRRRLATGASSWLLGGRGRRRSGLR 211
>11_06_0365 - 22742886-22744223
Length = 445
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +1
Query: 67 IRSQSMLGSWLVRGPGRRRTGFQLLVQPLR*PCLSRPCNEFS 192
IRS ++ SW RR F L + PCL C +S
Sbjct: 27 IRSSAVCASWCAASTAVRRARFPLPSSAKQLPCLFYACEAYS 68
>11_06_0362 - 22723104-22724441
Length = 445
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +1
Query: 67 IRSQSMLGSWLVRGPGRRRTGFQLLVQPLR*PCLSRPCNEFS 192
IRS ++ SW RR F L + PCL C +S
Sbjct: 27 IRSSAVCASWCAASTAVRRARFPLPSSAKQLPCLFYACEAYS 68
>06_02_0064 +
11062798-11063568,11064212-11064261,11064354-11064510,
11064598-11064816,11065301-11065429,11066502-11068031,
11068654-11069013,11069086-11069205,11069727-11069897,
11070022-11070180,11070327-11070452,11070660-11070968
Length = 1366
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -3
Query: 417 LSALIATTPSPH*DDIWPTPMDLKVSSTAAVPRKGRLPATPTGP 286
L L+ T H + PM + S+ AAV LPA P+ P
Sbjct: 119 LMQLLGNTAPTHLESAVSMPMPSEFSAAAAVAPPAPLPAMPSAP 162
>06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,
3363820-3364098,3364189-3364386,3364475-3365110,
3365209-3365463,3365579-3365685,3365770-3369566,
3369677-3370166,3370918-3371308,3371481-3371573,
3371687-3371810,3372544-3372791
Length = 2380
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/76 (23%), Positives = 36/76 (47%)
Frame = -1
Query: 389 PHIETIYGQHQWT*RFLRRQQFQGKVDCRPHQQDLRKCFGMTRQCR*EHMGSRWSLRNFL 210
P I T++ + + T + + ++ + D + +Q + F T Q H G W+L N+
Sbjct: 1432 PRINTLFQKDRHTLAY--DKGWRVRTDFKQYQVLKQNPFWWTHQ---RHDGKLWNLNNYR 1486
Query: 209 H*TLPELNSLQGLLRH 162
+ L ++G+L H
Sbjct: 1487 TDVIQALGGVEGILEH 1502
>05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,
3645328-3645525,3645614-3646249,3646352-3646606,
3646718-3646824,3646909-3650705,3650816-3651305,
3652043-3652433,3652621-3652713,3652818-3652941,
3653871-3654118
Length = 2350
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/76 (23%), Positives = 36/76 (47%)
Frame = -1
Query: 389 PHIETIYGQHQWT*RFLRRQQFQGKVDCRPHQQDLRKCFGMTRQCR*EHMGSRWSLRNFL 210
P I T++ + + T + + ++ + D + +Q + F T Q H G W+L N+
Sbjct: 1432 PRINTLFQKDRHTLAY--DKGWRVRTDFKQYQVLKQNPFWWTHQ---RHDGKLWNLNNYR 1486
Query: 209 H*TLPELNSLQGLLRH 162
+ L ++G+L H
Sbjct: 1487 TDVIQALGGVEGILEH 1502
>07_03_1004 +
23244479-23244648,23245104-23245276,23245535-23245638,
23245849-23246037,23246508-23248076
Length = 734
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +1
Query: 259 CLVIPKHLRRSCWCGRQSTFPWNCCRRRNLQVH 357
CLV P RR C R+S F CRR Q+H
Sbjct: 120 CLVFPWPARRRCPSRRRSLFRLR-CRRGRRQLH 151
>05_05_0017 + 21546434-21546841
Length = 135
Score = 27.5 bits (58), Expect = 6.7
Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Frame = -3
Query: 507 AQPHS-VPWPS-SPLTTPRTAGTGLGVIAETGLSALIATTPSPH*DDIW---PTP-MDLK 346
A P S P PS +PL+TP G V A + A TTP+P P+P D K
Sbjct: 47 ASPASDAPAPSPAPLSTPELCRPGEPVPAPSSSPAGATTTPAPAAPAATAPAPSPEADGK 106
Query: 345 VSSTAAVPRKGRLPATPTG 289
S AA P PA G
Sbjct: 107 SSGAAAAPPLMTWPAVLAG 125
>01_05_0791 +
25267885-25267930,25268258-25268713,25268802-25268832,
25268949-25269255
Length = 279
Score = 27.5 bits (58), Expect = 6.7
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +2
Query: 275 NIYEGPVGVAGNLPFLGTAAVEETFKSIGVGHISSQCGDGVVAIRAESPVSAITPSPV 448
N Y VA + F GTA + T S G S+ G G + SP + P+P+
Sbjct: 142 NSYYQKNPVATSCDFGGTATITNTDPSSGSCQYSASSGGGQNMLPPPSPTTLPPPTPM 199
>08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671
Length = 502
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = +1
Query: 298 CGRQSTF-PWNCCRRRNLQVHWCW 366
C RQ P +CCRR Q WC+
Sbjct: 371 CSRQEEEGPDHCCRRLRRQEQWCY 394
>03_02_0477 -
8770905-8770985,8771164-8771361,8771939-8772025,
8772094-8772179,8772270-8772368,8772431-8772551,
8773251-8773331,8773643-8773723,8773972-8774088,
8774185-8774256,8774621-8775055
Length = 485
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +1
Query: 247 SYRHC--LVIPKHLRRSCWCGRQSTFPWNCCRRRNLQVHWCW 366
+Y H +++ K+ SC G F N R+ N + +CW
Sbjct: 230 TYHHLKDIILEKYGSNSCNIGDDGGFAPNISRQWNYAIQYCW 271
>01_01_1143 - 9064210-9065682
Length = 490
Score = 27.1 bits (57), Expect = 8.8
Identities = 29/90 (32%), Positives = 35/90 (38%), Gaps = 4/90 (4%)
Frame = +2
Query: 254 GIALSSQNIYEGPV----GVAGNLPFLGTAAVEETFKSIGVGHISSQCGDGVVAIRAESP 421
G+ L Q +GP G G L GT+ + G H S G V SP
Sbjct: 334 GVVLHCQKAIDGPKPNKGGGLGGLYGAGTSGGRKGAGGYGA-HSHSLPGAAVGGHVMPSP 392
Query: 422 VSAITPSPVPAVRGVVNGLLGQGTECGCAS 511
VS++T P A VN LGQ AS
Sbjct: 393 VSSLTSLPGVAGGPGVNPALGQALTAILAS 422
>01_01_0219 + 1863478-1864041,1864459-1865109
Length = 404
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 408 LIATTPSPH*DDIWPTPMDLKVSSTAAVPRKGRLPATPTG 289
++ +PSP +WP P+ + A P P+TPTG
Sbjct: 58 IMQPSPSPETPCVWPPPLPSSTPTPAPSP-----PSTPTG 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,426,727
Number of Sequences: 37544
Number of extensions: 355060
Number of successful extensions: 1190
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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