BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov11f06 (512 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_01_0218 + 1856104-1856700,1856814-1857452 31 0.41 06_01_0366 - 2632115-2632180,2632359-2632470,2632736-2634168 31 0.72 12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-78... 29 2.2 04_01_0154 - 1775693-1775942,1776834-1777588 28 3.8 11_06_0365 - 22742886-22744223 28 5.1 11_06_0362 - 22723104-22724441 28 5.1 06_02_0064 + 11062798-11063568,11064212-11064261,11064354-110645... 28 5.1 06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336... 28 5.1 05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364... 28 5.1 07_03_1004 + 23244479-23244648,23245104-23245276,23245535-232456... 27 6.7 05_05_0017 + 21546434-21546841 27 6.7 01_05_0791 + 25267885-25267930,25268258-25268713,25268802-252688... 27 6.7 08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671 27 8.8 03_02_0477 - 8770905-8770985,8771164-8771361,8771939-8772025,877... 27 8.8 01_01_1143 - 9064210-9065682 27 8.8 01_01_0219 + 1863478-1864041,1864459-1865109 27 8.8 >01_01_0218 + 1856104-1856700,1856814-1857452 Length = 411 Score = 31.5 bits (68), Expect = 0.41 Identities = 17/63 (26%), Positives = 25/63 (39%) Frame = -3 Query: 477 SPLTTPRTAGTGLGVIAETGLSALIATTPSPH*DDIWPTPMDLKVSSTAAVPRKGRLPAT 298 SPL +P + T + A +PSP +WP +A++P PA Sbjct: 41 SPLLSPMLLSVSSLAPSSTPMPTPTAPSPSPETPCVWPPSPPSPTDPSASMPSPTERPAA 100 Query: 297 PTG 289 P G Sbjct: 101 PMG 103 >06_01_0366 - 2632115-2632180,2632359-2632470,2632736-2634168 Length = 536 Score = 30.7 bits (66), Expect = 0.72 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +2 Query: 371 ISSQCGDGVVAIRAESPVSAITPSPVPAVRGVVNGLLGQ 487 +SS G+ V ESPV AIT SP+ V + +G+ Sbjct: 302 VSSYLGNVVTYASRESPVEAITSSPLADVAAMAGAAIGE 340 >12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-780281, 780377-780571,780681-780788,780935-781156,781669-781986, 781988-782615,783059-783135,783161-783267,783491-783619, 783763-783820,783902-783984,784458-784539,784617-784693, 784827-784910,784999-785068,785146-785234,785319-786008, 786485-786797 Length = 1410 Score = 29.1 bits (62), Expect = 2.2 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 4/46 (8%) Frame = +1 Query: 298 CGRQSTFPWNCCRRRNLQVHWCW----PYIVSMWGRGRGYKS*KSR 423 C R +F W +++N H CW P+ W R R + S + R Sbjct: 615 CARVQSFAWFLRKKKNQAFHTCWWKRMPFTSINWLRDRLFTSIRRR 660 >04_01_0154 - 1775693-1775942,1776834-1777588 Length = 334 Score = 28.3 bits (60), Expect = 3.8 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +1 Query: 40 RSSRGRTSNIRSQSMLGSWLVRGPGRRRTGFQ 135 R +RG R + SWL+ G GRRR+G + Sbjct: 180 RGARGSWRRRRLATGASSWLLGGRGRRRSGLR 211 >11_06_0365 - 22742886-22744223 Length = 445 Score = 27.9 bits (59), Expect = 5.1 Identities = 14/42 (33%), Positives = 18/42 (42%) Frame = +1 Query: 67 IRSQSMLGSWLVRGPGRRRTGFQLLVQPLR*PCLSRPCNEFS 192 IRS ++ SW RR F L + PCL C +S Sbjct: 27 IRSSAVCASWCAASTAVRRARFPLPSSAKQLPCLFYACEAYS 68 >11_06_0362 - 22723104-22724441 Length = 445 Score = 27.9 bits (59), Expect = 5.1 Identities = 14/42 (33%), Positives = 18/42 (42%) Frame = +1 Query: 67 IRSQSMLGSWLVRGPGRRRTGFQLLVQPLR*PCLSRPCNEFS 192 IRS ++ SW RR F L + PCL C +S Sbjct: 27 IRSSAVCASWCAASTAVRRARFPLPSSAKQLPCLFYACEAYS 68 >06_02_0064 + 11062798-11063568,11064212-11064261,11064354-11064510, 11064598-11064816,11065301-11065429,11066502-11068031, 11068654-11069013,11069086-11069205,11069727-11069897, 11070022-11070180,11070327-11070452,11070660-11070968 Length = 1366 Score = 27.9 bits (59), Expect = 5.1 Identities = 15/44 (34%), Positives = 20/44 (45%) Frame = -3 Query: 417 LSALIATTPSPH*DDIWPTPMDLKVSSTAAVPRKGRLPATPTGP 286 L L+ T H + PM + S+ AAV LPA P+ P Sbjct: 119 LMQLLGNTAPTHLESAVSMPMPSEFSAAAAVAPPAPLPAMPSAP 162 >06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700, 3363820-3364098,3364189-3364386,3364475-3365110, 3365209-3365463,3365579-3365685,3365770-3369566, 3369677-3370166,3370918-3371308,3371481-3371573, 3371687-3371810,3372544-3372791 Length = 2380 Score = 27.9 bits (59), Expect = 5.1 Identities = 18/76 (23%), Positives = 36/76 (47%) Frame = -1 Query: 389 PHIETIYGQHQWT*RFLRRQQFQGKVDCRPHQQDLRKCFGMTRQCR*EHMGSRWSLRNFL 210 P I T++ + + T + + ++ + D + +Q + F T Q H G W+L N+ Sbjct: 1432 PRINTLFQKDRHTLAY--DKGWRVRTDFKQYQVLKQNPFWWTHQ---RHDGKLWNLNNYR 1486 Query: 209 H*TLPELNSLQGLLRH 162 + L ++G+L H Sbjct: 1487 TDVIQALGGVEGILEH 1502 >05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237, 3645328-3645525,3645614-3646249,3646352-3646606, 3646718-3646824,3646909-3650705,3650816-3651305, 3652043-3652433,3652621-3652713,3652818-3652941, 3653871-3654118 Length = 2350 Score = 27.9 bits (59), Expect = 5.1 Identities = 18/76 (23%), Positives = 36/76 (47%) Frame = -1 Query: 389 PHIETIYGQHQWT*RFLRRQQFQGKVDCRPHQQDLRKCFGMTRQCR*EHMGSRWSLRNFL 210 P I T++ + + T + + ++ + D + +Q + F T Q H G W+L N+ Sbjct: 1432 PRINTLFQKDRHTLAY--DKGWRVRTDFKQYQVLKQNPFWWTHQ---RHDGKLWNLNNYR 1486 Query: 209 H*TLPELNSLQGLLRH 162 + L ++G+L H Sbjct: 1487 TDVIQALGGVEGILEH 1502 >07_03_1004 + 23244479-23244648,23245104-23245276,23245535-23245638, 23245849-23246037,23246508-23248076 Length = 734 Score = 27.5 bits (58), Expect = 6.7 Identities = 15/33 (45%), Positives = 17/33 (51%) Frame = +1 Query: 259 CLVIPKHLRRSCWCGRQSTFPWNCCRRRNLQVH 357 CLV P RR C R+S F CRR Q+H Sbjct: 120 CLVFPWPARRRCPSRRRSLFRLR-CRRGRRQLH 151 >05_05_0017 + 21546434-21546841 Length = 135 Score = 27.5 bits (58), Expect = 6.7 Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 6/79 (7%) Frame = -3 Query: 507 AQPHS-VPWPS-SPLTTPRTAGTGLGVIAETGLSALIATTPSPH*DDIW---PTP-MDLK 346 A P S P PS +PL+TP G V A + A TTP+P P+P D K Sbjct: 47 ASPASDAPAPSPAPLSTPELCRPGEPVPAPSSSPAGATTTPAPAAPAATAPAPSPEADGK 106 Query: 345 VSSTAAVPRKGRLPATPTG 289 S AA P PA G Sbjct: 107 SSGAAAAPPLMTWPAVLAG 125 >01_05_0791 + 25267885-25267930,25268258-25268713,25268802-25268832, 25268949-25269255 Length = 279 Score = 27.5 bits (58), Expect = 6.7 Identities = 18/58 (31%), Positives = 25/58 (43%) Frame = +2 Query: 275 NIYEGPVGVAGNLPFLGTAAVEETFKSIGVGHISSQCGDGVVAIRAESPVSAITPSPV 448 N Y VA + F GTA + T S G S+ G G + SP + P+P+ Sbjct: 142 NSYYQKNPVATSCDFGGTATITNTDPSSGSCQYSASSGGGQNMLPPPSPTTLPPPTPM 199 >08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671 Length = 502 Score = 27.1 bits (57), Expect = 8.8 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%) Frame = +1 Query: 298 CGRQSTF-PWNCCRRRNLQVHWCW 366 C RQ P +CCRR Q WC+ Sbjct: 371 CSRQEEEGPDHCCRRLRRQEQWCY 394 >03_02_0477 - 8770905-8770985,8771164-8771361,8771939-8772025, 8772094-8772179,8772270-8772368,8772431-8772551, 8773251-8773331,8773643-8773723,8773972-8774088, 8774185-8774256,8774621-8775055 Length = 485 Score = 27.1 bits (57), Expect = 8.8 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Frame = +1 Query: 247 SYRHC--LVIPKHLRRSCWCGRQSTFPWNCCRRRNLQVHWCW 366 +Y H +++ K+ SC G F N R+ N + +CW Sbjct: 230 TYHHLKDIILEKYGSNSCNIGDDGGFAPNISRQWNYAIQYCW 271 >01_01_1143 - 9064210-9065682 Length = 490 Score = 27.1 bits (57), Expect = 8.8 Identities = 29/90 (32%), Positives = 35/90 (38%), Gaps = 4/90 (4%) Frame = +2 Query: 254 GIALSSQNIYEGPV----GVAGNLPFLGTAAVEETFKSIGVGHISSQCGDGVVAIRAESP 421 G+ L Q +GP G G L GT+ + G H S G V SP Sbjct: 334 GVVLHCQKAIDGPKPNKGGGLGGLYGAGTSGGRKGAGGYGA-HSHSLPGAAVGGHVMPSP 392 Query: 422 VSAITPSPVPAVRGVVNGLLGQGTECGCAS 511 VS++T P A VN LGQ AS Sbjct: 393 VSSLTSLPGVAGGPGVNPALGQALTAILAS 422 >01_01_0219 + 1863478-1864041,1864459-1865109 Length = 404 Score = 27.1 bits (57), Expect = 8.8 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = -3 Query: 408 LIATTPSPH*DDIWPTPMDLKVSSTAAVPRKGRLPATPTG 289 ++ +PSP +WP P+ + A P P+TPTG Sbjct: 58 IMQPSPSPETPCVWPPPLPSSTPTPAPSP-----PSTPTG 92 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,426,727 Number of Sequences: 37544 Number of extensions: 355060 Number of successful extensions: 1190 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1161 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1190 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1106928780 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -