BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov11f06 (512 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.42 SB_54816| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3 SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2 SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2 SB_26428| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2 SB_40492| Best HMM Match : PROCN (HMM E-Value=0) 27 6.9 SB_9576| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0016) 27 6.9 SB_8902| Best HMM Match : DUF1070 (HMM E-Value=0.76) 27 6.9 SB_4546| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9 SB_44412| Best HMM Match : DUF1070 (HMM E-Value=0.76) 27 6.9 SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13) 27 6.9 SB_5819| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9 SB_50401| Best HMM Match : Pkinase (HMM E-Value=1.7e-16) 27 9.1 SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1 >SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1011 Score = 31.5 bits (68), Expect = 0.42 Identities = 21/73 (28%), Positives = 34/73 (46%) Frame = -3 Query: 501 PHSVPWPSSPLTTPRTAGTGLGVIAETGLSALIATTPSPH*DDIWPTPMDLKVSSTAAVP 322 P + PS+P +TP T T L + + + +T +P TP+ ST + P Sbjct: 195 PSTRSTPSTP-STPSTPST-LSMPSTPSMPNTPSTPSTPSTPSTLSTPITPSTPSTPSTP 252 Query: 321 RKGRLPATPTGPS 283 +P+TP+ PS Sbjct: 253 STPSMPSTPSTPS 265 Score = 31.5 bits (68), Expect = 0.42 Identities = 21/73 (28%), Positives = 34/73 (46%) Frame = -3 Query: 501 PHSVPWPSSPLTTPRTAGTGLGVIAETGLSALIATTPSPH*DDIWPTPMDLKVSSTAAVP 322 P + PS+P +TP T T L + + + +T +P TP+ ST + P Sbjct: 745 PSTRSTPSTP-STPSTPST-LSMPSTPSMPNTPSTPSTPSTPSTLSTPITPSTPSTPSTP 802 Query: 321 RKGRLPATPTGPS 283 +P+TP+ PS Sbjct: 803 STPSMPSTPSTPS 815 >SB_54816| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 197 Score = 29.9 bits (64), Expect = 1.3 Identities = 17/45 (37%), Positives = 21/45 (46%) Frame = +2 Query: 317 FLGTAAVEETFKSIGVGHISSQCGDGVVAIRAESPVSAITPSPVP 451 F GTA + K VG I QC G+V A S + + P P P Sbjct: 12 FCGTAPSIDRLKDERVGTIRRQCEQGLVPYAARS-IDSTHPQPAP 55 >SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 856 Score = 29.1 bits (62), Expect = 2.2 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = +1 Query: 274 KHLRRSCWCGRQSTFPWNCCRRRNLQVHWC 363 + + R WCGRQ+ C +N+Q H C Sbjct: 277 QQIPRCRWCGRQAVHLRKDCPAKNIQCHNC 306 >SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1994 Score = 27.9 bits (59), Expect = 5.2 Identities = 24/89 (26%), Positives = 35/89 (39%) Frame = +2 Query: 176 LATNSALGASNGGSFAVTSVSPCAPTGIALSSQNIYEGPVGVAGNLPFLGTAAVEETFKS 355 LAT+S A + +S SP T A SSQ + + P T TF S Sbjct: 265 LATSSNSQALKTETLNSSSASPAVSTASASSSQLVASNSSSSSQASPATSTNQTSATFIS 324 Query: 356 IGVGHISSQCGDGVVAIRAESPVSAITPS 442 + I+ Q +VA ++ S + S Sbjct: 325 LSTS-ITDQTSSSLVAESGQTSSSLVAES 352 >SB_26428| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 931 Score = 27.9 bits (59), Expect = 5.2 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = -3 Query: 483 PSSPLTTPRTAGTGLGVIAETGLSALIA 400 P P PRT+GT GVIA ++ ++A Sbjct: 604 PGPPTNAPRTSGTHPGVIAGAVIACVLA 631 >SB_40492| Best HMM Match : PROCN (HMM E-Value=0) Length = 1784 Score = 27.5 bits (58), Expect = 6.9 Identities = 18/76 (23%), Positives = 36/76 (47%) Frame = -1 Query: 389 PHIETIYGQHQWT*RFLRRQQFQGKVDCRPHQQDLRKCFGMTRQCR*EHMGSRWSLRNFL 210 P I T++ + + T + + ++ + D + +Q + F T Q H G W+L N+ Sbjct: 1384 PRINTLFQKDRHTLAY--DKGWRVRTDFKQYQVLKQNPFWWTHQ---RHDGKLWNLNNYR 1438 Query: 209 H*TLPELNSLQGLLRH 162 + L ++G+L H Sbjct: 1439 TDMIQALGGVEGILEH 1454 >SB_9576| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0016) Length = 491 Score = 27.5 bits (58), Expect = 6.9 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 4/67 (5%) Frame = +1 Query: 208 WRKFRSDQREPMCSYRHCLVIPK-HLRRSCWCGRQSTFPWNCCRRRNLQVHW---CWPYI 375 WRKF+ D PM C+ I + + + W + + +R + HW C Y Sbjct: 328 WRKFQMDDLSPMQIPESCIPINRCSTKATGWMTQPHPDARDGVVQRTVCFHWDGDCCHYQ 387 Query: 376 VSMWGRG 396 VS+ RG Sbjct: 388 VSIMVRG 394 >SB_8902| Best HMM Match : DUF1070 (HMM E-Value=0.76) Length = 544 Score = 27.5 bits (58), Expect = 6.9 Identities = 14/36 (38%), Positives = 17/36 (47%) Frame = -3 Query: 408 LIATTPSPH*DDIWPTPMDLKVSSTAAVPRKGRLPA 301 L+ +TP PH I P+D S AV R PA Sbjct: 242 LVHSTPQPHTHSIEKGPLDQNQSERLAVKPMARAPA 277 >SB_4546| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 514 Score = 27.5 bits (58), Expect = 6.9 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 6/57 (10%) Frame = -3 Query: 396 TPSPH*DDIWPTPMDLKVSSTAAVPR-KGRLP-ATPTG--PS*M--FWDDKAMPVGA 244 TP P+ DD P LKV + + V + KGR P T G P M F ++K + VGA Sbjct: 289 TPLPNSDDKTPDDKKLKVKTPSVVHKIKGRKPEKTKNGEMPEWMKKFVEEKQLTVGA 345 >SB_44412| Best HMM Match : DUF1070 (HMM E-Value=0.76) Length = 632 Score = 27.5 bits (58), Expect = 6.9 Identities = 14/36 (38%), Positives = 17/36 (47%) Frame = -3 Query: 408 LIATTPSPH*DDIWPTPMDLKVSSTAAVPRKGRLPA 301 L+ +TP PH I P+D S AV R PA Sbjct: 478 LVHSTPQPHTHSIEKGPLDQNQSERLAVKPMARAPA 513 >SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13) Length = 1463 Score = 27.5 bits (58), Expect = 6.9 Identities = 16/39 (41%), Positives = 19/39 (48%) Frame = -3 Query: 318 KGRLPATPTGPS*MFWDDKAMPVGAHGLTLVTAKLPPLD 202 +G LP TP P M WD + +P H AK PLD Sbjct: 346 RGLLP-TPGVPGQMVWDQQGLPGQPHPGQEDMAKKDPLD 383 >SB_5819| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 176 Score = 27.5 bits (58), Expect = 6.9 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 6/57 (10%) Frame = -3 Query: 396 TPSPH*DDIWPTPMDLKVSSTAAVPR-KGRLP-ATPTG--PS*M--FWDDKAMPVGA 244 TP P+ DD P LKV + + V + KGR P T G P M F ++K + VGA Sbjct: 78 TPLPNSDDKTPDDKKLKVKTPSVVHKIKGRKPEKTKNGEMPEWMKKFVEEKQLTVGA 134 >SB_50401| Best HMM Match : Pkinase (HMM E-Value=1.7e-16) Length = 535 Score = 27.1 bits (57), Expect = 9.1 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 3/73 (4%) Frame = -3 Query: 375 DIWPTPMDLKVSSTAAVPRKGRLPATPTGPS*MFWDDKAMPVGAHGLTLVTAKLPPLDAP 196 D+ P + K STA P+ +LP + ++K + A G TL A P P Sbjct: 138 DVKPRLSNGKYKSTAISPKSSKLPTRRSTRLSPQIENKDLDYSATGATLSRANTRPALEP 197 Query: 195 RAE---FVARSTK 166 R + RSTK Sbjct: 198 RNDQNIIFTRSTK 210 >SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2332 Score = 27.1 bits (57), Expect = 9.1 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = -3 Query: 411 ALIATTPSPH*DDIWPTPMDLKVSSTAAVPRKGRLPATPTGP 286 +L A P D+I P P+D+ +S PR+ P P P Sbjct: 1889 SLKAHLPLHKTDEILPQPLDVNTNSCPTPPREPTPPPPPPTP 1930 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,005,352 Number of Sequences: 59808 Number of extensions: 378795 Number of successful extensions: 1286 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1119 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1283 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1136110413 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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