Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11f06
(512 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.42
SB_54816| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_26428| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_40492| Best HMM Match : PROCN (HMM E-Value=0) 27 6.9
SB_9576| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0016) 27 6.9
SB_8902| Best HMM Match : DUF1070 (HMM E-Value=0.76) 27 6.9
SB_4546| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_44412| Best HMM Match : DUF1070 (HMM E-Value=0.76) 27 6.9
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13) 27 6.9
SB_5819| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_50401| Best HMM Match : Pkinase (HMM E-Value=1.7e-16) 27 9.1
SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 31.5 bits (68), Expect = 0.42
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = -3
Query: 501 PHSVPWPSSPLTTPRTAGTGLGVIAETGLSALIATTPSPH*DDIWPTPMDLKVSSTAAVP 322
P + PS+P +TP T T L + + + +T +P TP+ ST + P
Sbjct: 195 PSTRSTPSTP-STPSTPST-LSMPSTPSMPNTPSTPSTPSTPSTLSTPITPSTPSTPSTP 252
Query: 321 RKGRLPATPTGPS 283
+P+TP+ PS
Sbjct: 253 STPSMPSTPSTPS 265
Score = 31.5 bits (68), Expect = 0.42
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = -3
Query: 501 PHSVPWPSSPLTTPRTAGTGLGVIAETGLSALIATTPSPH*DDIWPTPMDLKVSSTAAVP 322
P + PS+P +TP T T L + + + +T +P TP+ ST + P
Sbjct: 745 PSTRSTPSTP-STPSTPST-LSMPSTPSMPNTPSTPSTPSTPSTLSTPITPSTPSTPSTP 802
Query: 321 RKGRLPATPTGPS 283
+P+TP+ PS
Sbjct: 803 STPSMPSTPSTPS 815
>SB_54816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +2
Query: 317 FLGTAAVEETFKSIGVGHISSQCGDGVVAIRAESPVSAITPSPVP 451
F GTA + K VG I QC G+V A S + + P P P
Sbjct: 12 FCGTAPSIDRLKDERVGTIRRQCEQGLVPYAARS-IDSTHPQPAP 55
>SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 856
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 274 KHLRRSCWCGRQSTFPWNCCRRRNLQVHWC 363
+ + R WCGRQ+ C +N+Q H C
Sbjct: 277 QQIPRCRWCGRQAVHLRKDCPAKNIQCHNC 306
>SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1994
Score = 27.9 bits (59), Expect = 5.2
Identities = 24/89 (26%), Positives = 35/89 (39%)
Frame = +2
Query: 176 LATNSALGASNGGSFAVTSVSPCAPTGIALSSQNIYEGPVGVAGNLPFLGTAAVEETFKS 355
LAT+S A + +S SP T A SSQ + + P T TF S
Sbjct: 265 LATSSNSQALKTETLNSSSASPAVSTASASSSQLVASNSSSSSQASPATSTNQTSATFIS 324
Query: 356 IGVGHISSQCGDGVVAIRAESPVSAITPS 442
+ I+ Q +VA ++ S + S
Sbjct: 325 LSTS-ITDQTSSSLVAESGQTSSSLVAES 352
>SB_26428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 931
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 483 PSSPLTTPRTAGTGLGVIAETGLSALIA 400
P P PRT+GT GVIA ++ ++A
Sbjct: 604 PGPPTNAPRTSGTHPGVIAGAVIACVLA 631
>SB_40492| Best HMM Match : PROCN (HMM E-Value=0)
Length = 1784
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/76 (23%), Positives = 36/76 (47%)
Frame = -1
Query: 389 PHIETIYGQHQWT*RFLRRQQFQGKVDCRPHQQDLRKCFGMTRQCR*EHMGSRWSLRNFL 210
P I T++ + + T + + ++ + D + +Q + F T Q H G W+L N+
Sbjct: 1384 PRINTLFQKDRHTLAY--DKGWRVRTDFKQYQVLKQNPFWWTHQ---RHDGKLWNLNNYR 1438
Query: 209 H*TLPELNSLQGLLRH 162
+ L ++G+L H
Sbjct: 1439 TDMIQALGGVEGILEH 1454
>SB_9576| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0016)
Length = 491
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = +1
Query: 208 WRKFRSDQREPMCSYRHCLVIPK-HLRRSCWCGRQSTFPWNCCRRRNLQVHW---CWPYI 375
WRKF+ D PM C+ I + + + W + + +R + HW C Y
Sbjct: 328 WRKFQMDDLSPMQIPESCIPINRCSTKATGWMTQPHPDARDGVVQRTVCFHWDGDCCHYQ 387
Query: 376 VSMWGRG 396
VS+ RG
Sbjct: 388 VSIMVRG 394
>SB_8902| Best HMM Match : DUF1070 (HMM E-Value=0.76)
Length = 544
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 408 LIATTPSPH*DDIWPTPMDLKVSSTAAVPRKGRLPA 301
L+ +TP PH I P+D S AV R PA
Sbjct: 242 LVHSTPQPHTHSIEKGPLDQNQSERLAVKPMARAPA 277
>SB_4546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 27.5 bits (58), Expect = 6.9
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Frame = -3
Query: 396 TPSPH*DDIWPTPMDLKVSSTAAVPR-KGRLP-ATPTG--PS*M--FWDDKAMPVGA 244
TP P+ DD P LKV + + V + KGR P T G P M F ++K + VGA
Sbjct: 289 TPLPNSDDKTPDDKKLKVKTPSVVHKIKGRKPEKTKNGEMPEWMKKFVEEKQLTVGA 345
>SB_44412| Best HMM Match : DUF1070 (HMM E-Value=0.76)
Length = 632
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 408 LIATTPSPH*DDIWPTPMDLKVSSTAAVPRKGRLPA 301
L+ +TP PH I P+D S AV R PA
Sbjct: 478 LVHSTPQPHTHSIEKGPLDQNQSERLAVKPMARAPA 513
>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
Length = 1463
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -3
Query: 318 KGRLPATPTGPS*MFWDDKAMPVGAHGLTLVTAKLPPLD 202
+G LP TP P M WD + +P H AK PLD
Sbjct: 346 RGLLP-TPGVPGQMVWDQQGLPGQPHPGQEDMAKKDPLD 383
>SB_5819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 176
Score = 27.5 bits (58), Expect = 6.9
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Frame = -3
Query: 396 TPSPH*DDIWPTPMDLKVSSTAAVPR-KGRLP-ATPTG--PS*M--FWDDKAMPVGA 244
TP P+ DD P LKV + + V + KGR P T G P M F ++K + VGA
Sbjct: 78 TPLPNSDDKTPDDKKLKVKTPSVVHKIKGRKPEKTKNGEMPEWMKKFVEEKQLTVGA 134
>SB_50401| Best HMM Match : Pkinase (HMM E-Value=1.7e-16)
Length = 535
Score = 27.1 bits (57), Expect = 9.1
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Frame = -3
Query: 375 DIWPTPMDLKVSSTAAVPRKGRLPATPTGPS*MFWDDKAMPVGAHGLTLVTAKLPPLDAP 196
D+ P + K STA P+ +LP + ++K + A G TL A P P
Sbjct: 138 DVKPRLSNGKYKSTAISPKSSKLPTRRSTRLSPQIENKDLDYSATGATLSRANTRPALEP 197
Query: 195 RAE---FVARSTK 166
R + RSTK
Sbjct: 198 RNDQNIIFTRSTK 210
>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2332
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -3
Query: 411 ALIATTPSPH*DDIWPTPMDLKVSSTAAVPRKGRLPATPTGP 286
+L A P D+I P P+D+ +S PR+ P P P
Sbjct: 1889 SLKAHLPLHKTDEILPQPLDVNTNSCPTPPREPTPPPPPPTP 1930
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,005,352
Number of Sequences: 59808
Number of extensions: 378795
Number of successful extensions: 1286
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1283
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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