SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11f06
         (512 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.42 
SB_54816| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_26428| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_40492| Best HMM Match : PROCN (HMM E-Value=0)                       27   6.9  
SB_9576| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0016)            27   6.9  
SB_8902| Best HMM Match : DUF1070 (HMM E-Value=0.76)                   27   6.9  
SB_4546| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.9  
SB_44412| Best HMM Match : DUF1070 (HMM E-Value=0.76)                  27   6.9  
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)                 27   6.9  
SB_5819| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.9  
SB_50401| Best HMM Match : Pkinase (HMM E-Value=1.7e-16)               27   9.1  
SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = -3

Query: 501 PHSVPWPSSPLTTPRTAGTGLGVIAETGLSALIATTPSPH*DDIWPTPMDLKVSSTAAVP 322
           P +   PS+P +TP T  T L + +   +    +T  +P       TP+     ST + P
Sbjct: 195 PSTRSTPSTP-STPSTPST-LSMPSTPSMPNTPSTPSTPSTPSTLSTPITPSTPSTPSTP 252

Query: 321 RKGRLPATPTGPS 283
               +P+TP+ PS
Sbjct: 253 STPSMPSTPSTPS 265



 Score = 31.5 bits (68), Expect = 0.42
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = -3

Query: 501 PHSVPWPSSPLTTPRTAGTGLGVIAETGLSALIATTPSPH*DDIWPTPMDLKVSSTAAVP 322
           P +   PS+P +TP T  T L + +   +    +T  +P       TP+     ST + P
Sbjct: 745 PSTRSTPSTP-STPSTPST-LSMPSTPSMPNTPSTPSTPSTPSTLSTPITPSTPSTPSTP 802

Query: 321 RKGRLPATPTGPS 283
               +P+TP+ PS
Sbjct: 803 STPSMPSTPSTPS 815


>SB_54816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +2

Query: 317 FLGTAAVEETFKSIGVGHISSQCGDGVVAIRAESPVSAITPSPVP 451
           F GTA   +  K   VG I  QC  G+V   A S + +  P P P
Sbjct: 12  FCGTAPSIDRLKDERVGTIRRQCEQGLVPYAARS-IDSTHPQPAP 55


>SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 856

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 274 KHLRRSCWCGRQSTFPWNCCRRRNLQVHWC 363
           + + R  WCGRQ+      C  +N+Q H C
Sbjct: 277 QQIPRCRWCGRQAVHLRKDCPAKNIQCHNC 306


>SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1994

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 24/89 (26%), Positives = 35/89 (39%)
 Frame = +2

Query: 176 LATNSALGASNGGSFAVTSVSPCAPTGIALSSQNIYEGPVGVAGNLPFLGTAAVEETFKS 355
           LAT+S   A    +   +S SP   T  A SSQ +       +   P   T     TF S
Sbjct: 265 LATSSNSQALKTETLNSSSASPAVSTASASSSQLVASNSSSSSQASPATSTNQTSATFIS 324

Query: 356 IGVGHISSQCGDGVVAIRAESPVSAITPS 442
           +    I+ Q    +VA   ++  S +  S
Sbjct: 325 LSTS-ITDQTSSSLVAESGQTSSSLVAES 352


>SB_26428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 931

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 483 PSSPLTTPRTAGTGLGVIAETGLSALIA 400
           P  P   PRT+GT  GVIA   ++ ++A
Sbjct: 604 PGPPTNAPRTSGTHPGVIAGAVIACVLA 631


>SB_40492| Best HMM Match : PROCN (HMM E-Value=0)
          Length = 1784

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/76 (23%), Positives = 36/76 (47%)
 Frame = -1

Query: 389  PHIETIYGQHQWT*RFLRRQQFQGKVDCRPHQQDLRKCFGMTRQCR*EHMGSRWSLRNFL 210
            P I T++ + + T  +   + ++ + D + +Q   +  F  T Q    H G  W+L N+ 
Sbjct: 1384 PRINTLFQKDRHTLAY--DKGWRVRTDFKQYQVLKQNPFWWTHQ---RHDGKLWNLNNYR 1438

Query: 209  H*TLPELNSLQGLLRH 162
               +  L  ++G+L H
Sbjct: 1439 TDMIQALGGVEGILEH 1454


>SB_9576| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0016)
          Length = 491

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
 Frame = +1

Query: 208 WRKFRSDQREPMCSYRHCLVIPK-HLRRSCWCGRQSTFPWNCCRRRNLQVHW---CWPYI 375
           WRKF+ D   PM     C+ I +   + + W  +      +   +R +  HW   C  Y 
Sbjct: 328 WRKFQMDDLSPMQIPESCIPINRCSTKATGWMTQPHPDARDGVVQRTVCFHWDGDCCHYQ 387

Query: 376 VSMWGRG 396
           VS+  RG
Sbjct: 388 VSIMVRG 394


>SB_8902| Best HMM Match : DUF1070 (HMM E-Value=0.76)
          Length = 544

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -3

Query: 408 LIATTPSPH*DDIWPTPMDLKVSSTAAVPRKGRLPA 301
           L+ +TP PH   I   P+D   S   AV    R PA
Sbjct: 242 LVHSTPQPHTHSIEKGPLDQNQSERLAVKPMARAPA 277


>SB_4546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 514

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
 Frame = -3

Query: 396 TPSPH*DDIWPTPMDLKVSSTAAVPR-KGRLP-ATPTG--PS*M--FWDDKAMPVGA 244
           TP P+ DD  P    LKV + + V + KGR P  T  G  P  M  F ++K + VGA
Sbjct: 289 TPLPNSDDKTPDDKKLKVKTPSVVHKIKGRKPEKTKNGEMPEWMKKFVEEKQLTVGA 345


>SB_44412| Best HMM Match : DUF1070 (HMM E-Value=0.76)
          Length = 632

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -3

Query: 408 LIATTPSPH*DDIWPTPMDLKVSSTAAVPRKGRLPA 301
           L+ +TP PH   I   P+D   S   AV    R PA
Sbjct: 478 LVHSTPQPHTHSIEKGPLDQNQSERLAVKPMARAPA 513


>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
          Length = 1463

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -3

Query: 318 KGRLPATPTGPS*MFWDDKAMPVGAHGLTLVTAKLPPLD 202
           +G LP TP  P  M WD + +P   H      AK  PLD
Sbjct: 346 RGLLP-TPGVPGQMVWDQQGLPGQPHPGQEDMAKKDPLD 383


>SB_5819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
 Frame = -3

Query: 396 TPSPH*DDIWPTPMDLKVSSTAAVPR-KGRLP-ATPTG--PS*M--FWDDKAMPVGA 244
           TP P+ DD  P    LKV + + V + KGR P  T  G  P  M  F ++K + VGA
Sbjct: 78  TPLPNSDDKTPDDKKLKVKTPSVVHKIKGRKPEKTKNGEMPEWMKKFVEEKQLTVGA 134


>SB_50401| Best HMM Match : Pkinase (HMM E-Value=1.7e-16)
          Length = 535

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = -3

Query: 375 DIWPTPMDLKVSSTAAVPRKGRLPATPTGPS*MFWDDKAMPVGAHGLTLVTAKLPPLDAP 196
           D+ P   + K  STA  P+  +LP   +       ++K +   A G TL  A   P   P
Sbjct: 138 DVKPRLSNGKYKSTAISPKSSKLPTRRSTRLSPQIENKDLDYSATGATLSRANTRPALEP 197

Query: 195 RAE---FVARSTK 166
           R +      RSTK
Sbjct: 198 RNDQNIIFTRSTK 210


>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2332

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 411  ALIATTPSPH*DDIWPTPMDLKVSSTAAVPRKGRLPATPTGP 286
            +L A  P    D+I P P+D+  +S    PR+   P  P  P
Sbjct: 1889 SLKAHLPLHKTDEILPQPLDVNTNSCPTPPREPTPPPPPPTP 1930


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,005,352
Number of Sequences: 59808
Number of extensions: 378795
Number of successful extensions: 1286
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1283
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -