Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11f06
         (512 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58752-3|AAB00666.1|  367|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z93375-3|CAB07565.3|  443|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z81064-2|CAB02963.1|  259|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>U58752-3|AAB00666.1|  367|Caenorhabditis elegans Hypothetical
           protein B0218.5 protein.
          Length = 367

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +1

Query: 184 EFSSGSV*WRKFRSDQREPMCSYR 255
           E++SG + WRKF++ +RE +  Y+
Sbjct: 226 EWTSGGLPWRKFKATEREKVLKYK 249


>Z93375-3|CAB07565.3|  443|Caenorhabditis elegans Hypothetical
           protein C38C6.5 protein.
          Length = 443

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = -2

Query: 466 HSPDCRHRAWCNSRDGTFSSYSHDPVPTLRRYMANTNGLEGFFDGSSSK 320
           H    +HR W N  D   ++  ++   +L   MA  +  E  F   S K
Sbjct: 51  HIQPFKHRDWMNLHDSIINNTKYEHGQSLANKMAEASSSENAFFADSQK 99


>Z81064-2|CAB02963.1|  259|Caenorhabditis elegans Hypothetical
           protein F16B12.2 protein.
          Length = 259

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +1

Query: 361 CWPYIVSMWGRGRGYKS*KSRLCYYTKPC 447
           C PY    +    G    K  +CYY KPC
Sbjct: 110 CHPYTCRCFEGYAGDNGDKDDVCYYAKPC 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,124,560
Number of Sequences: 27780
Number of extensions: 261673
Number of successful extensions: 688
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)