Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11f06
         (512 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65070.1 68414.m07377 DNA mismatch repair MutS family protein...    32   0.26 
At5g20750.1 68418.m02466 Ulp1 protease family protein contains P...    29   1.4  
At4g38780.1 68417.m05491 splicing factor, putative strong simila...    28   3.2  
At2g35860.1 68415.m04403 beta-Ig-H3 domain-containing protein / ...    28   3.2  
At1g80070.1 68414.m09373 splicing factor, putative strong simila...    28   4.2  
At5g36290.2 68418.m04379 expressed protein contains Pfam profile...    27   7.4  
At5g36290.1 68418.m04378 expressed protein contains Pfam profile...    27   7.4  
At4g21640.1 68417.m03136 subtilase family protein similar to sub...    27   7.4  
At1g69800.1 68414.m08031 CBS domain-containing protein low simil...    27   7.4  
At5g43390.1 68418.m05304 hypothetical protein strong similarity ...    27   9.8  
At1g60370.1 68414.m06797 F-box family protein similar to hypothe...    27   9.8  

>At1g65070.1 68414.m07377 DNA mismatch repair MutS family protein
           contains Pfam profile PF00488: MutS domain V
          Length = 857

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -3

Query: 471 LTTPRTAGTGLGVIAETGLSALI--ATTPSPH*DDIWPTPMDLKVSSTAAV 325
           +T+  T   GL V  ++    L+  +   SP+  DI+P P+D+KV S+A V
Sbjct: 347 VTSEHTKTPGLAVDIDSAQHPLLLGSVLGSPNGGDIFPVPVDIKVESSAKV 397


>At5g20750.1 68418.m02466 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 944

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -3

Query: 501 PHSVPWPSSPLTTPRT 454
           P  +PWPSSPL++P+T
Sbjct: 622 PIILPWPSSPLSSPKT 637


>At4g38780.1 68417.m05491 splicing factor, putative strong similarity
            to splicing factor Prp8 [Homo sapiens] GI:3661610;
            contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
          Length = 2332

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 18/76 (23%), Positives = 36/76 (47%)
 Frame = -1

Query: 389  PHIETIYGQHQWT*RFLRRQQFQGKVDCRPHQQDLRKCFGMTRQCR*EHMGSRWSLRNFL 210
            P I T++ + + T  +   + ++ + D + +Q   +  F  T Q    H G  W+L N+ 
Sbjct: 1416 PRINTLFQKDRHTLAY--DKGWRVRTDFKQYQALKQNPFWWTHQ---RHDGKLWNLNNYR 1470

Query: 209  H*TLPELNSLQGLLRH 162
               +  L  ++G+L H
Sbjct: 1471 TDVIQALGGVEGILEH 1486


>At2g35860.1 68415.m04403 beta-Ig-H3 domain-containing protein /
           fasciclin domain-containing protein contains Pfam
           profile PF02469: Fasciclin domain
          Length = 445

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 365 GHISSQCGDGVVAIRAESPVSAITPSPVPAVRGVVNGLLGQGTECGC 505
           G IS Q  DGV+  + E+P + I P+  P V+ V     G+  E  C
Sbjct: 389 GRISVQGIDGVLFPKEETPATEIKPA-APVVKKVSKSRRGKLMEVAC 434


>At1g80070.1 68414.m09373 splicing factor, putative strong similarity
            to splicing factor Prp8 [Homo sapiens] GI:3661610;
            contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
          Length = 2382

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 18/76 (23%), Positives = 36/76 (47%)
 Frame = -1

Query: 389  PHIETIYGQHQWT*RFLRRQQFQGKVDCRPHQQDLRKCFGMTRQCR*EHMGSRWSLRNFL 210
            P I T++ + + T  +   + ++ + D + +Q   +  F  T Q    H G  W+L N+ 
Sbjct: 1464 PRINTLFQKDRHTLAY--DKGWRVRTDFKQYQVLKQNPFWWTHQ---RHDGKLWNLNNYR 1518

Query: 209  H*TLPELNSLQGLLRH 162
               +  L  ++G+L H
Sbjct: 1519 TDVIQALGGVEGILEH 1534


>At5g36290.2 68418.m04379 expressed protein contains Pfam profile
           PF01169: Uncharacterized protein family UPF0016
          Length = 293

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 170 VDLATN-SALGASNGGSFAVTSVSPCAPTGIALSSQNIYEGPVGVAGNLPFLG 325
           + LAT+ +A+G + G S   T  +  A  G ++ +  I +  V   G L FLG
Sbjct: 230 IALATHKNAIGVAIGASIGHTVCTSLAVVGGSMLASRISQRTVATVGGLLFLG 282


>At5g36290.1 68418.m04378 expressed protein contains Pfam profile
           PF01169: Uncharacterized protein family UPF0016
          Length = 293

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 170 VDLATN-SALGASNGGSFAVTSVSPCAPTGIALSSQNIYEGPVGVAGNLPFLG 325
           + LAT+ +A+G + G S   T  +  A  G ++ +  I +  V   G L FLG
Sbjct: 230 IALATHKNAIGVAIGASIGHTVCTSLAVVGGSMLASRISQRTVATVGGLLFLG 282


>At4g21640.1 68417.m03136 subtilase family protein similar to
           subtilase SP1 [Oryza sativa] GI:9957714
          Length = 733

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 21/73 (28%), Positives = 32/73 (43%)
 Frame = +2

Query: 188 SALGASNGGSFAVTSVSPCAPTGIALSSQNIYEGPVGVAGNLPFLGTAAVEETFKSIGVG 367
           +A G    G+  + +V+P   T  A +    +   + +  N  F G   +E  F S    
Sbjct: 344 AAAGNDGSGAQTICNVAPWLLTVAATTLDRSFPTKITLGNNQTFFGKTILE--FDST--- 398

Query: 368 HISSQCGDGVVAI 406
           H SS  G GVVA+
Sbjct: 399 HPSSIAGRGVVAV 411


>At1g69800.1 68414.m08031 CBS domain-containing protein low
           similarity to SP|Q9UGI9 5'-AMP-activated protein kinase,
           gamma-3 subunit (AMPK gamma-3 chain) (AMPK gamma3) {Homo
           sapiens}; contains Pfam profile PF00571: CBS domain
          Length = 447

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 19/56 (33%), Positives = 24/56 (42%)
 Frame = +2

Query: 260 ALSSQNIYEGPVGVAGNLPFLGTAAVEETFKSIGVGHISSQCGDGVVAIRAESPVS 427
           A+SS   Y   V    NLP      +   F  I V       G  V+ I+AE+PVS
Sbjct: 15  AVSSCEAYFEKVQSRKNLPKSLQETLNSAFAGIPVSSFPQVPGGRVIEIQAETPVS 70


>At5g43390.1 68418.m05304 hypothetical protein strong similarity to
           unknown protein (emb|CAB86628.1)
          Length = 643

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 409 SYSHDPVPTLRRYMANTNGLEGFFDGSSSKE 317
           S+SHDP+ TL + + N  G+ G   G S KE
Sbjct: 82  SWSHDPLTTL-KLLCNLRGVRG--TGKSDKE 109


>At1g60370.1 68414.m06797 F-box family protein similar to
           hypothetical protein GI:9993352 from [Arabidopsis
           thaliana]
          Length = 283

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 433 YTKPCACSPGSGQWATRPR 489
           YT P  C+P +GQ+A  P+
Sbjct: 122 YTVPVVCNPRTGQYAVLPK 140


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,696,828
Number of Sequences: 28952
Number of extensions: 254419
Number of successful extensions: 651
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)