Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11f04
(676 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31300.1 68415.m03821 transducin family protein / WD-40 repea... 208 3e-54
At2g30910.2 68415.m03768 transducin family protein / WD-40 repea... 208 3e-54
At2g30910.1 68415.m03767 transducin family protein / WD-40 repea... 208 3e-54
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 46 3e-05
At2g30050.1 68415.m03654 transducin family protein / WD-40 repea... 43 2e-04
At3g01340.1 68416.m00051 protein transport protein SEC13 family ... 42 4e-04
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 41 9e-04
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea... 39 0.004
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 38 0.006
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea... 37 0.011
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 37 0.014
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 36 0.019
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 36 0.019
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 36 0.019
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 36 0.019
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 36 0.019
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 36 0.025
At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10... 36 0.033
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 35 0.043
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 35 0.043
At5g64630.3 68418.m08123 transducin family protein / WD-40 repea... 35 0.057
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 34 0.075
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 34 0.075
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 34 0.100
At3g56900.1 68416.m06329 aladin-related / adracalin-related weak... 34 0.100
At2g20800.1 68415.m02446 pyridine nucleotide-disulphide oxidored... 34 0.100
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 34 0.100
At5g64630.2 68418.m08122 transducin family protein / WD-40 repea... 33 0.13
At5g64630.1 68418.m08121 transducin family protein / WD-40 repea... 33 0.13
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 33 0.13
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 33 0.13
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 33 0.17
At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5 ... 33 0.17
At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5 ... 32 0.30
At2g19580.1 68415.m02287 senescence-associated protein-related s... 32 0.30
At5g27945.1 68418.m03364 transducin family protein / WD-40 repea... 32 0.40
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 31 0.70
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 31 0.70
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 31 0.70
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 31 0.70
At3g42660.1 68416.m04436 transducin family protein / WD-40 repea... 31 0.70
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 31 0.70
At5g19920.1 68418.m02370 transducin family protein / WD-40 repea... 31 0.93
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 31 0.93
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 31 0.93
At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5 ... 30 1.2
At2g20330.1 68415.m02374 transducin family protein / WD-40 repea... 30 1.2
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 30 1.6
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 29 2.1
At1g15850.1 68414.m01902 transducin family protein / WD-40 repea... 29 2.1
At5g50970.1 68418.m06321 WD-40 repeat family protein contains Pf... 29 2.8
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 29 2.8
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 29 2.8
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 29 2.8
At4g01860.2 68417.m00244 transducin family protein / WD-40 repea... 29 2.8
At4g01860.1 68417.m00243 transducin family protein / WD-40 repea... 29 2.8
At4g00090.1 68417.m00009 transducin family protein / WD-40 repea... 29 2.8
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 29 3.8
At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6 ... 29 3.8
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 28 5.0
At1g48880.1 68414.m05476 hypothetical protein 28 5.0
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 28 6.6
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 28 6.6
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 28 6.6
At1g68210.1 68414.m07792 two-component responsive regulator fami... 28 6.6
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 27 8.7
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ... 27 8.7
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 27 8.7
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 27 8.7
At1g60390.1 68414.m06799 BURP domain-containing protein / polyga... 27 8.7
At1g35210.1 68414.m04367 expressed protein 27 8.7
>At2g31300.1 68415.m03821 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
identical to putative ARP2/3 protein complex subunit p41
(GI:4432825)[Arabidopsis thaliana]; similar to ARP2/3
complex 41 kDa subunit (P41-ARC) (Actin-related protein
2/3 complex subunit 1B) (SP:Q9WV32) [Mus musculus]
Length = 378
Score = 208 bits (507), Expect = 3e-54
Identities = 92/157 (58%), Positives = 116/157 (73%), Gaps = 1/157 (0%)
Frame = +2
Query: 209 ITCHAWNKDRSQIAFSPNNNEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVT 385
ITCHAW+ D S +A PNN EVHIYK D W++ + L +HD V GIDW+ +N+IVT
Sbjct: 13 ITCHAWSPDLSMVALCPNNTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIVT 72
Query: 386 CSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLISICYFEKE 565
S DRN+YVW+ + +W TLV+LR+NRAA CV+WSP ENKFAVGSGA+ + ICY+E+E
Sbjct: 73 VSHDRNSYVWSL-EGAEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQE 131
Query: 566 NNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFK 676
NNWWVSK I+K S+VTS+ WHPNN+LL S D K
Sbjct: 132 NNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGK 168
Score = 31.5 bits (68), Expect = 0.53
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Frame = +2
Query: 215 CHAWNKDRSQIAFSPNNNEVHI--YKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTC 388
C W+ ++ A V I Y++E N W H+ V + W PN + T
Sbjct: 104 CVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATT 163
Query: 389 SVDRNAYVWT 418
S D V++
Sbjct: 164 STDGKCRVFS 173
>At2g30910.2 68415.m03768 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 208 bits (507), Expect = 3e-54
Identities = 92/157 (58%), Positives = 116/157 (73%), Gaps = 1/157 (0%)
Frame = +2
Query: 209 ITCHAWNKDRSQIAFSPNNNEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVT 385
ITCHAW+ D S +A PNN EVHIYK D W++ + L +HD V GIDW+ +N+IVT
Sbjct: 13 ITCHAWSPDLSMVALCPNNTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIVT 72
Query: 386 CSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLISICYFEKE 565
S DRN+YVW+ + +W TLV+LR+NRAA CV+WSP ENKFAVGSGA+ + ICY+E+E
Sbjct: 73 VSHDRNSYVWSL-EGAEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQE 131
Query: 566 NNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFK 676
NNWWVSK I+K S+VTS+ WHPNN+LL S D K
Sbjct: 132 NNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGK 168
Score = 33.5 bits (73), Expect = 0.13
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 17/118 (14%)
Frame = +2
Query: 215 CHAWNKDRSQIAFSPNNNEVHI--YKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTC 388
C W+ ++ A V I Y++E N W H+ V + W PN + T
Sbjct: 104 CVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATT 163
Query: 389 SVDRNAYVWT---QGDDGKWATTL---------VLLRINRA---ATCVKWSPMENKFA 517
S D V++ +G D K+A L +L+++ + A VKWSP N A
Sbjct: 164 STDGKCRVFSTFIKGVDTKYAHYLNGAFFLLKQQILQLDLSYSWAFGVKWSPSGNTLA 221
>At2g30910.1 68415.m03767 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 208 bits (507), Expect = 3e-54
Identities = 92/157 (58%), Positives = 116/157 (73%), Gaps = 1/157 (0%)
Frame = +2
Query: 209 ITCHAWNKDRSQIAFSPNNNEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVT 385
ITCHAW+ D S +A PNN EVHIYK D W++ + L +HD V GIDW+ +N+IVT
Sbjct: 13 ITCHAWSPDLSMVALCPNNTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIVT 72
Query: 386 CSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLISICYFEKE 565
S DRN+YVW+ + +W TLV+LR+NRAA CV+WSP ENKFAVGSGA+ + ICY+E+E
Sbjct: 73 VSHDRNSYVWSL-EGAEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQE 131
Query: 566 NNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFK 676
NNWWVSK I+K S+VTS+ WHPNN+LL S D K
Sbjct: 132 NNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGK 168
Score = 31.5 bits (68), Expect = 0.53
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Frame = +2
Query: 215 CHAWNKDRSQIAFSPNNNEVHI--YKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTC 388
C W+ ++ A V I Y++E N W H+ V + W PN + T
Sbjct: 104 CVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATT 163
Query: 389 SVDRNAYVWT 418
S D V++
Sbjct: 164 STDGKCRVFS 173
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 45.6 bits (103), Expect = 3e-05
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Frame = +2
Query: 221 AWNKDRSQIAFSPNNNEVHIYKK-EGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVD 397
+WN S +A + V I++ EGN++ L H V + W P + + +CS D
Sbjct: 125 SWNASGSCLATCSRDKSVWIWEVLEGNEYDCAAVLTGHTQDVKMVQWHPTMDVLFSCSYD 184
Query: 398 RNAYV-WTQGDDGKWATTLVLLRINRAATCVKWS 496
V W++ DDG++ L N + WS
Sbjct: 185 NTIKVWWSEDDDGEYQCVQTLGESNNGHSSTVWS 218
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/93 (21%), Positives = 44/93 (47%)
Frame = +2
Query: 221 AWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDR 400
AW+ +A + + I+K G++++ + L H+ V + W + + + TCS D+
Sbjct: 81 AWSPSGQLLATASFDGTTGIWKNYGSEFECISTLEGHENEVKSVSWNASGSCLATCSRDK 140
Query: 401 NAYVWTQGDDGKWATTLVLLRINRAATCVKWSP 499
+ ++W + ++ VL + V+W P
Sbjct: 141 SVWIWEVLEGNEYDCAAVLTGHTQDVKMVQWHP 173
Score = 29.1 bits (62), Expect = 2.8
Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 4/159 (2%)
Frame = +2
Query: 206 PITCHAWNKDRSQIAFSPNNNEVHIYKKEG--NDWKQTNNLVE-HDLRVMGIDWAPNTNR 376
P++ HA + +A +N V I+++ W L E H V W+P+
Sbjct: 30 PVSSHA-DGVSPILASCSGDNTVRIWEQSSLSRSWTCKTVLEETHTRTVRSCAWSPSGQL 88
Query: 377 IVTCSVDRNAYVW-TQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLISICY 553
+ T S D +W G + + +TL V W+ + A S + + I +
Sbjct: 89 LATASFDGTTGIWKNYGSEFECISTLE--GHENEVKSVSWNASGSCLATCSRDKSVWI-W 145
Query: 554 FEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSAD 670
E N + + V + WHP +L + S D
Sbjct: 146 EVLEGNEYDCAAVLTGHTQDVKMVQWHPTMDVLFSCSYD 184
>At2g30050.1 68415.m03654 transducin family protein / WD-40 repeat
family protein similar to SEC13-related protein
(SP:P55735) [Homo sapiens]
Length = 302
Score = 42.7 bits (96), Expect = 2e-04
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 3/114 (2%)
Frame = +2
Query: 305 KQTNNLVEHDLRVMGIDWA-PNTNRIV-TCSVDRNAYVWTQGDDGKWATTLVLLRINRAA 478
+Q L H V + WA P I+ +CS D +W +G+ +W V +
Sbjct: 47 QQLATLTGHRGPVWEVAWAHPKYGSILASCSYDGQVILWKEGNQNQWTQDHVFTDHKSSV 106
Query: 479 TCVKWSPMENKFAVGSGARLISICYF-EKENNWWVSKHIKKPIRSTVTSIDWHP 637
+ W+P + ++ G+ +I F + + W + I + VTS+ W P
Sbjct: 107 NSIAWAPHDIGLSLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAP 160
Score = 40.7 bits (91), Expect = 9e-04
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
Frame = +2
Query: 176 QTLTFGDSCAPITCHAWNKDR--SQIAFSPNNNEVHIYKKEG-NDWKQTNNLVEHDLRVM 346
Q T P+ AW + S +A + +V ++K+ N W Q + +H V
Sbjct: 48 QLATLTGHRGPVWEVAWAHPKYGSILASCSYDGQVILWKEGNQNQWTQDHVFTDHKSSVN 107
Query: 347 GIDWAPNTNRI-VTC-SVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSP 499
I WAP+ + + C S D N V+T DG W T+ + T V W+P
Sbjct: 108 SIAWAPHDIGLSLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAP 160
Score = 39.9 bits (89), Expect = 0.002
Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 6/110 (5%)
Frame = +2
Query: 263 NNEVHIYKKEGNDWKQT--NNLVEHDLRVMGIDWAPNT----NRIVTCSVDRNAYVWTQG 424
+N V ++K WK L +H V + WAPN + I + S D +WT G
Sbjct: 185 DNTVKVWKLANGSWKMDCFPALQKHTDWVRDVAWAPNLGLPKSTIASGSQDGKVIIWTVG 244
Query: 425 DDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLISICYFEKENNW 574
+G+ VL V WS N AV G +++ + W
Sbjct: 245 KEGEQWEGKVLKDFMTPVWRVSWSLTGNLLAVSDGNNNVTVWKEAVDGEW 294
Score = 31.1 bits (67), Expect = 0.70
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 545 ICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNI--LLVAGSAD 670
I + E N W H+ +S+V SI W P++I L GS+D
Sbjct: 83 ILWKEGNQNQWTQDHVFTDHKSSVNSIAWAPHDIGLSLACGSSD 126
>At3g01340.1 68416.m00051 protein transport protein SEC13 family
protein / WD-40 repeat family protein similar to Protein
transport protein SEC13 SP|Q04491 {Saccharomyces
cerevisiae} and SEC13 (SP:P53024) [Pichia pastoris]
Length = 302
Score = 41.9 bits (94), Expect = 4e-04
Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
Frame = +2
Query: 320 LVEHDLRVMGIDWA-PNTNRIV-TCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 493
L H V + WA P ++ +CS D +W +G+ +W V + + W
Sbjct: 52 LTGHRGPVWQVAWAHPKFGSLLASCSYDGQIILWKEGNQNQWTQAHVFTDHKVSVNSIAW 111
Query: 494 SPMENKFAVGSGARLISICYFE-KENNWWVSKHIKKPIRSTVTSIDWHP 637
+P E ++ GA +I F + + W + I + VTS+ W P
Sbjct: 112 APHELGLSLACGASDGNISVFSARADGGWDTTKIDQAHPVGVTSVSWAP 160
Score = 41.9 bits (94), Expect = 4e-04
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 6/114 (5%)
Frame = +2
Query: 206 PITCHAWNKDR--SQIAFSPNNNEVHIYKKEG-NDWKQTNNLVEHDLRVMGIDWAPNTNR 376
P+ AW + S +A + ++ ++K+ N W Q + +H + V I WAP+
Sbjct: 58 PVWQVAWAHPKFGSLLASCSYDGQIILWKEGNQNQWTQAHVFTDHKVSVNSIAWAPHELG 117
Query: 377 I-VTCSV-DRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFA-VGSG 529
+ + C D N V++ DG W TT + T V W+P A V SG
Sbjct: 118 LSLACGASDGNISVFSARADGGWDTTKIDQAHPVGVTSVSWAPATEPGALVSSG 171
Score = 38.7 bits (86), Expect = 0.004
Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 6/110 (5%)
Frame = +2
Query: 263 NNEVHIYKKEGNDWKQT--NNLVEHDLRVMGIDWAPNT----NRIVTCSVDRNAYVWTQG 424
++ V ++K WK L +H V + WAPN + I + S D +WT G
Sbjct: 185 DSTVKVWKFSNGSWKMDCFPALNKHTDWVRDVAWAPNLGLPKSTIASGSEDGKVIIWTIG 244
Query: 425 DDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLISICYFEKENNW 574
+G+ VL V WS N AV G +++ + W
Sbjct: 245 KEGEQWEGTVLKDFKTPVWRVSWSLTGNLLAVSDGNNNVTVWKESVDGEW 294
Score = 35.5 bits (78), Expect = 0.033
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +2
Query: 236 RSQIAFSPNNNEVHIYK--KEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAY 409
+S IA + +V I+ KEG W+ T L + V + W+ N + + N
Sbjct: 226 KSTIASGSEDGKVIIWTIGKEGEQWEGTV-LKDFKTPVWRVSWSLTGNLLAVSDGNNNVT 284
Query: 410 VWTQGDDGKWATTLVL 457
VW + DG+W V+
Sbjct: 285 VWKESVDGEWEQVTVV 300
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 40.7 bits (91), Expect = 9e-04
Identities = 29/117 (24%), Positives = 47/117 (40%)
Frame = +2
Query: 320 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSP 499
LV H V + ++ + + T S D A +W DD K L + V WSP
Sbjct: 220 LVAHKNEVWFVQFSNSGKYLATASSDCTAIIWKVLDDNKVELKHTLESHQNPVSFVSWSP 279
Query: 500 MENKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSAD 670
+ K A ++ + ++ + TV+S W P++ LV GS+D
Sbjct: 280 DDTKLLTCGNAEVLKL--WDVDTGVLRHTFGNNNTGFTVSSCAWFPDSTRLVCGSSD 334
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/113 (20%), Positives = 39/113 (34%), Gaps = 3/113 (2%)
Frame = +2
Query: 290 EGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRIN 469
+ N + + L H V + W+P+ +++TC +W D G T
Sbjct: 255 DDNKVELKHTLESHQNPVSFVSWSPDDTKLLTCGNAEVLKLW-DVDTGVLRHTFGNNNTG 313
Query: 470 RAATCVKWSPMENKFAVGSGARLISICYFEKENN---WWVSKHIKKPIRSTVT 619
+ W P + GS I ++ + N W I K + VT
Sbjct: 314 FTVSSCAWFPDSTRLVCGSSDPERGIVMWDTDGNEIKAWRGTRIPKVVDLAVT 366
>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
family protein contains 10 WD-40 repeats (PF00400);
similar to 66kDa stress protein (SWISS-PROT: P90587)[
Physarum polycephalum (Slime mold)]
Length = 474
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +2
Query: 209 ITCHAWNKDRSQIAFSPNNNEVHIYK-KEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVT 385
+ C ++ D ++ ++ + IY K G+ + + H + + W+P++ R++T
Sbjct: 54 VNCIRYSPDGTKFITVSSDKKGMIYDGKTGDKVGELASEDGHKGSIYAVSWSPDSKRVLT 113
Query: 386 CSVDRNAYVWTQGDDG 433
S D++A VW +DG
Sbjct: 114 VSADKSAKVWEVAEDG 129
Score = 37.1 bits (82), Expect = 0.011
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = +2
Query: 209 ITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTC 388
+T ++ D + A N E ++ +E K NN++ H R+ + W+PN + T
Sbjct: 359 LTVIRYSPDLTMFASGDANREAVVWDRETKQVK-LNNMLFHTARINSLAWSPNNKMVATG 417
Query: 389 SVDRNAYVW 415
S+D V+
Sbjct: 418 SIDTCVIVY 426
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Frame = +2
Query: 221 AWNKDRSQIAFSPNNNEVHIYK---KEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCS 391
+WN S +A + V I++ +E +++ L H V + W P + + +CS
Sbjct: 99 SWNASGSLLATCGRDKSVWIWEIQPEEDDEFDTIAVLTGHSEDVKMVLWHPTMDVLFSCS 158
Query: 392 VDRNAYVW-TQGDDGKWATTLVLLRINRAATCVKWS 496
D +W ++ +DG + L +N + WS
Sbjct: 159 YDNTIKIWCSEDEDGDYNCVQTLSELNNGHSSTVWS 194
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +2
Query: 278 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW--TQGDDGKWATTL 451
+++ D + + L H+ V + W + + + TC D++ ++W +D ++ T
Sbjct: 74 VWENFATDSESVSVLRGHESEVKSVSWNASGSLLATCGRDKSVWIWEIQPEEDDEFDTIA 133
Query: 452 VLLRINRAATCVKWSP 499
VL + V W P
Sbjct: 134 VLTGHSEDVKMVLWHP 149
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 305 KQTNNLVEHDLRVMGIDWAPNTNRIV-TCSVDRNAYVWTQ 421
++ L H RV + W P + ++ +CS D+ +W Q
Sbjct: 11 EEVQKLEGHTDRVWNVAWNPAADGVIASCSADKTVRIWEQ 50
>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
family protein similar to signal transducer and
activator of transcription interacting protein 1
(GI:15929722) {Mus musculus}; similar to hypothetical
protein GB:AAD43147 GI:5430747 from (Arabidopsis
thaliana); contains Pfam PF00400: WD domain, G-beta
repeat (11 copies, 2 weak)
Length = 840
Score = 37.1 bits (82), Expect = 0.011
Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Frame = +2
Query: 278 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT--QGDDGKWATTL 451
I+ E WK L H L V ++++ + +++ S DR+ V++ + D+G+ + L
Sbjct: 629 IWLWEVGTWKAVGRLQSHSLTVTHLEFSYDDTLLLSVSRDRHFSVFSIQRTDNGEVSHKL 688
Query: 452 V--LLRINRAATCVKWSPMENKFAVGSGARLISICYFEKENNWWVSK-HIKKPIRSTVTS 622
+ + R W+P ++FA S + + I + EN+ + + + P S+VT+
Sbjct: 689 MAKVEAHKRIIWACSWNPFGHQFATSSRDKTVKI--WSVENDARIKQILVLPPFGSSVTA 746
Query: 623 IDW 631
+ W
Sbjct: 747 VAW 749
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = +2
Query: 329 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPME 505
H + W P ++ T S D+ +W+ +D + LVL + T V W+ ++
Sbjct: 695 HKRIIWACSWNPFGHQFATSSRDKTVKIWSVENDARIKQILVLPPFGSSVTAVAWTGLD 753
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 36.7 bits (81), Expect = 0.014
Identities = 26/73 (35%), Positives = 32/73 (43%)
Frame = +2
Query: 332 DLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENK 511
DL+V +DW P NRIV+ S D VW K T + L TC +SP
Sbjct: 3 DLQVYSLDWTPERNRIVSASQDGRLIVWNALTSQK--THAIKLPCAWVMTCA-FSPNGQS 59
Query: 512 FAVGSGARLISIC 550
A G L S+C
Sbjct: 60 VACGG---LDSVC 69
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 36.3 bits (80), Expect = 0.019
Identities = 19/85 (22%), Positives = 41/85 (48%)
Frame = +2
Query: 197 SCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNR 376
S + + C +++ D +A + ++ +V I+ E + T EH + + + PN+ +
Sbjct: 507 SASKVICCSFSYDGKLLASAGHDKKVFIWNMETLQVESTPE--EHAHIITDVRFRPNSTQ 564
Query: 377 IVTCSVDRNAYVWTQGDDGKWATTL 451
+ T S D+ +W D G + T+
Sbjct: 565 LATSSFDKTIKIWDASDPGYFLRTI 589
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 36.3 bits (80), Expect = 0.019
Identities = 19/85 (22%), Positives = 41/85 (48%)
Frame = +2
Query: 197 SCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNR 376
S + + C +++ D +A + ++ +V I+ E + T EH + + + PN+ +
Sbjct: 509 SASKVICCSFSYDGKLLASAGHDKKVFIWNMETLQVESTPE--EHAHIITDVRFRPNSTQ 566
Query: 377 IVTCSVDRNAYVWTQGDDGKWATTL 451
+ T S D+ +W D G + T+
Sbjct: 567 LATSSFDKTIKIWDASDPGYFLRTI 591
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 36.3 bits (80), Expect = 0.019
Identities = 19/85 (22%), Positives = 41/85 (48%)
Frame = +2
Query: 197 SCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNR 376
S + + C +++ D +A + ++ +V I+ E + T EH + + + PN+ +
Sbjct: 509 SASKVICCSFSYDGKLLASAGHDKKVFIWNMETLQVESTPE--EHAHIITDVRFRPNSTQ 566
Query: 377 IVTCSVDRNAYVWTQGDDGKWATTL 451
+ T S D+ +W D G + T+
Sbjct: 567 LATSSFDKTIKIWDASDPGYFLRTI 591
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 36.3 bits (80), Expect = 0.019
Identities = 19/85 (22%), Positives = 41/85 (48%)
Frame = +2
Query: 197 SCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNR 376
S + + C +++ D +A + ++ +V I+ E + T EH + + + PN+ +
Sbjct: 509 SASKVICCSFSYDGKLLASAGHDKKVFIWNMETLQVESTPE--EHAHIITDVRFRPNSTQ 566
Query: 377 IVTCSVDRNAYVWTQGDDGKWATTL 451
+ T S D+ +W D G + T+
Sbjct: 567 LATSSFDKTIKIWDASDPGYFLRTI 591
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 36.3 bits (80), Expect = 0.019
Identities = 19/85 (22%), Positives = 41/85 (48%)
Frame = +2
Query: 197 SCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNR 376
S + + C +++ D +A + ++ +V I+ E + T EH + + + PN+ +
Sbjct: 509 SASKVICCSFSYDGKLLASAGHDKKVFIWNMETLQVESTPE--EHAHIITDVRFRPNSTQ 566
Query: 377 IVTCSVDRNAYVWTQGDDGKWATTL 451
+ T S D+ +W D G + T+
Sbjct: 567 LATSSFDKTIKIWDASDPGYFLRTI 591
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 35.9 bits (79), Expect = 0.025
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Frame = +2
Query: 224 WNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRN 403
W+ D S +A +N VHI+ T L H V G+ W P + I + S D+
Sbjct: 126 WSPDDSMLASGSLDNTVHIWNMRTG--MCTTVLRGHLSLVKGVTWDPIGSFIASQSDDKT 183
Query: 404 AYVWTQGD-------DGKWATTL 451
+W D DG WA +L
Sbjct: 184 VIIWRTSDWGMAHRTDGHWAKSL 206
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
Frame = +2
Query: 185 TFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIY-KKEGN--------------DWKQTNN 319
T D + C W K+ +A ++ + I+ +K G+ +WK
Sbjct: 54 TLRDHFGSVNCVRWAKNSRYVASGSDDQVIQIHERKPGSGTTEFGSGEAPDVENWKAVMT 113
Query: 320 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 415
L H V+ ++W+P+ + + + S+D ++W
Sbjct: 114 LRGHTADVVDLNWSPDDSMLASGSLDNTVHIW 145
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Frame = +2
Query: 323 VEHD-LRVMGIDWAPNTNRIVTCSVDRNAYVWT-QGDDGKWATTLVLLRINRAATCVKWS 496
V+H+ L++ ID PN R T D + Q D K L + CV+W+
Sbjct: 9 VKHEGLQIFSIDVQPNGERFATGGGDHKSVDKDLQNIDTKERLLATLRDHFGSVNCVRWA 68
Query: 497 PMENKFAVGSGARLISI 547
A GS ++I I
Sbjct: 69 KNSRYVASGSDDQVIQI 85
>At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 35.5 bits (78), Expect = 0.033
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +2
Query: 209 ITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWA-PNTNR-IV 382
+T AW+ D + + S + +H+Y +G+D +Q + H V + +A PN +V
Sbjct: 412 VTRVAWSPDGNLLGVSFTKHLIHVYAYQGSDLRQHLEIDAHVGCVNDLAFAHPNKQMCVV 471
Query: 383 TCSVDRNAYVW 415
TC D+ VW
Sbjct: 472 TCGDDKLIKVW 482
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 35.1 bits (77), Expect = 0.043
Identities = 23/118 (19%), Positives = 53/118 (44%)
Frame = +2
Query: 314 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 493
+ L H +V + + +++ ++T S D+ +W DG +A L + V
Sbjct: 258 STLTGHSKKVTSVKFVGDSDLVLTASADKTVRIWRNPGDGNYACGYTLNDHSAEVRAVTV 317
Query: 494 SPMENKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSA 667
P NK+ V S + + C+++ + +++ T+ +HP+ ++L G++
Sbjct: 318 HP-TNKYFV-SASLDGTWCFYDLSSGSCLAQVSDDSKNVDYTAAAFHPDGLILGTGTS 373
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 35.1 bits (77), Expect = 0.043
Identities = 23/118 (19%), Positives = 53/118 (44%)
Frame = +2
Query: 314 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 493
+ L H +V + + +++ ++T S D+ +W DG +A L + V
Sbjct: 258 STLTGHSKKVTSVKFVGDSDLVLTASADKTVRIWRNPGDGNYACGYTLNDHSAEVRAVTV 317
Query: 494 SPMENKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSA 667
P NK+ V S + + C+++ + +++ T+ +HP+ ++L G++
Sbjct: 318 HP-TNKYFV-SASLDGTWCFYDLSSGSCLAQVSDDSKNVDYTAAAFHPDGLILGTGTS 373
>At5g64630.3 68418.m08123 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 428
Score = 34.7 bits (76), Expect = 0.057
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 4/108 (3%)
Frame = +2
Query: 236 RSQIAFSPNNNEVHIYK----KEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRN 403
R +A + E+ I+K + WK +L H V+ + W+P+ +++ SVD +
Sbjct: 17 RELLASGADGGELFIWKLHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNS 76
Query: 404 AYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLISI 547
+W D K + +L V W P+ A S R I
Sbjct: 77 CIIW---DVNKGSVHQILDAHCHYVQGVAWDPLAKYVASLSSDRTCRI 121
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 34.3 bits (75), Expect = 0.075
Identities = 25/74 (33%), Positives = 31/74 (41%)
Frame = +2
Query: 329 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMEN 508
H +V +DW P NRIV+ S D VW K T + L TC +SP
Sbjct: 64 HTGKVYSLDWTPERNRIVSASQDGRLIVWNALTSQK--THAIKLPCAWVMTCA-FSPNGQ 120
Query: 509 KFAVGSGARLISIC 550
A G L S+C
Sbjct: 121 SVACGG---LDSVC 131
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 34.3 bits (75), Expect = 0.075
Identities = 25/74 (33%), Positives = 31/74 (41%)
Frame = +2
Query: 329 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMEN 508
H +V +DW P NRIV+ S D VW K T + L TC +SP
Sbjct: 64 HTGKVYSLDWTPERNRIVSASQDGRLIVWNALTSQK--THAIKLPCAWVMTCA-FSPNGQ 120
Query: 509 KFAVGSGARLISIC 550
A G L S+C
Sbjct: 121 SVACGG---LDSVC 131
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 33.9 bits (74), Expect = 0.100
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Frame = +2
Query: 308 QTNNLVE-HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 484
QT ++E H V + ++ N + + S D+ A +W DG + L+ ++
Sbjct: 265 QTAQILESHTDEVWFLQFSHNGKYLASSSKDQTAIIWEISADGHISLKHTLVGHHKPVIA 324
Query: 485 VKWSPMENKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGS 664
+ WSP +++ + GA + I ++ ++ V + K I + S W+P+ ++AG
Sbjct: 325 ILWSP-DDRQVLTCGAEEV-IRRWDVDSGDCVHMYEKGGI--SPISCGWYPDGQGIIAGM 380
Query: 665 AD 670
D
Sbjct: 381 TD 382
>At3g56900.1 68416.m06329 aladin-related / adracalin-related weak
similarity to SP|Q9NRG9 Aladin (Adracalin) (GL003) {Homo
sapiens}; non-consensus AT-AC splice sites at intron 6
Length = 447
Score = 33.9 bits (74), Expect = 0.100
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 1/122 (0%)
Frame = +2
Query: 221 AWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLR-VMGIDWAPNTNRIVTCSVD 397
+W++ + IAF N+V I E D K+ L R V ++W PN + ++ +
Sbjct: 106 SWHQGKHIIAFISGANQVTIRDYEDKDEKEPCILTSDSQRNVKALEWRPNGGKSLSIACR 165
Query: 398 RNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLISICYFEKENNWW 577
+W G A L+R +A + + GSG R I + + +N+
Sbjct: 166 GGICIWAASYPGNMA----LVRSGGSA-------LRGSLSRGSGTRWILVDFLRCQNDEQ 214
Query: 578 VS 583
+S
Sbjct: 215 IS 216
>At2g20800.1 68415.m02446 pyridine nucleotide-disulphide
oxidoreductase family protein similar to GI:3718005
alternative NADH-dehydrogenase {Yarrowia lipolytica} ;
contains Pfam profile PF00070: Pyridine
nucleotide-disulphide oxidoreductase
Length = 582
Score = 33.9 bits (74), Expect = 0.100
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +2
Query: 230 KDRSQIAFSPNNNEVHIYKKEGNDWKQTNNL-VEHDLRVMGIDWAPNTNRIVTCSVDRNA 406
K+ + +N ++H KEG+ K T +++D+ ++ + PNT T V+ +A
Sbjct: 133 KEAECVKIDASNKKIHCRSKEGSSLKGTTEFDMDYDILILAVGAKPNT--FNTPGVEEHA 190
Query: 407 YVWTQGDD 430
Y + +D
Sbjct: 191 YFLKEAED 198
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 33.9 bits (74), Expect = 0.100
Identities = 25/119 (21%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Frame = +2
Query: 314 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 493
+ L H +V I + +T+ ++T S D+ +W +DG + T+ L+ + A
Sbjct: 258 STLTGHSKKVTSIKFVGDTDLVLTASSDKTVRIWGCSEDGNY-TSRHTLKDHSAEVRAVT 316
Query: 494 SPMENKFAVGSGARLISICYFEKENNWWVSKHIKKPIRS-TVTSIDWHPNNILLVAGSA 667
NK+ V S + + C+++ + +++ T+ +HP+ ++L G+A
Sbjct: 317 VHATNKYFV-SASLDSTWCFYDLSSGLCLAQVTDASENDVNYTAAAFHPDGLILGTGTA 374
>At5g64630.2 68418.m08122 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 487
Score = 33.5 bits (73), Expect = 0.13
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
Frame = +2
Query: 245 IAFSPNNNEVHIYK----KEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYV 412
+A + E+ I+K + WK +L H V+ + W+P+ +++ SVD + +
Sbjct: 79 LASGADGGELFIWKLHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCII 138
Query: 413 WTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLISI 547
W D K + +L V W P+ A S R I
Sbjct: 139 W---DVNKGSVHQILDAHCHYVQGVAWDPLAKYVASLSSDRTCRI 180
>At5g64630.1 68418.m08121 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 397
Score = 33.5 bits (73), Expect = 0.13
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
Frame = +2
Query: 245 IAFSPNNNEVHIYK----KEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYV 412
+A + E+ I+K + WK +L H V+ + W+P+ +++ SVD + +
Sbjct: 79 LASGADGGELFIWKLHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCII 138
Query: 413 WTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLISI 547
W D K + +L V W P+ A S R I
Sbjct: 139 W---DVNKGSVHQILDAHCHYVQGVAWDPLAKYVASLSSDRTCRI 180
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/79 (22%), Positives = 36/79 (45%)
Frame = +2
Query: 197 SCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNR 376
S +TC ++ D +A + ++ + ++ + K L EH + I ++P+ R
Sbjct: 650 STTKVTCCHFSSDGKMLASAGHDKKAVLWYTD--TMKPKTTLEEHTAMITDIRFSPSQLR 707
Query: 377 IVTCSVDRNAYVWTQGDDG 433
+ T S D+ VW + G
Sbjct: 708 LATSSFDKTVRVWDADNKG 726
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 33.5 bits (73), Expect = 0.13
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +2
Query: 329 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 457
H + + W+P+ +++T S D++A +W D+G + L
Sbjct: 231 HKGSIYAVSWSPDGKQVLTVSADKSAKIWDISDNGSGSLNTTL 273
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 33.1 bits (72), Expect = 0.17
Identities = 31/151 (20%), Positives = 63/151 (41%), Gaps = 6/151 (3%)
Frame = +2
Query: 236 RSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 415
R+ ++F+ ++ + IY + + + H V + W P + + +CS D A +W
Sbjct: 416 RNNVSFATSSTDSMIYLCKIGETRPAKTFTGHQGEVNCVKWDPTGSLLASCSDDSTAKIW 475
Query: 416 TQGDDGKWATTLVLLRIN-RAATCVKWSPMENKFAVGSGARLISICYFEKENNWWVSKHI 592
+ K +T + LR + + ++WSP + ++ F+ W ++
Sbjct: 476 ----NIKQSTFVHDLREHTKEIYTIRWSPTGPGTNNPNKQLTLASASFDSTVKLWDAELG 531
Query: 593 K-----KPIRSTVTSIDWHPNNILLVAGSAD 670
K R V S+ + PN + +GS D
Sbjct: 532 KMLCSFNGHREPVYSLAFSPNGEYIASGSLD 562
Score = 31.1 bits (67), Expect = 0.70
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = +2
Query: 209 ITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTC 388
+T WN + + +A + + I+ G + + L +H + + W + ++T
Sbjct: 327 VTTLDWNGEGTLLATGSCDGQARIWTLNG---ELISTLSKHKGPIFSLKWNKKGDYLLTG 383
Query: 389 SVDRNAYVW 415
SVDR A VW
Sbjct: 384 SVDRTAVVW 392
>At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis};
Length = 466
Score = 33.1 bits (72), Expect = 0.17
Identities = 29/128 (22%), Positives = 56/128 (43%), Gaps = 3/128 (2%)
Frame = +2
Query: 173 AQTLTFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLV-EHDLRVMG 349
++ +T + P+T W +D +A +N+EV ++ N +Q L+ H+ RV
Sbjct: 156 SELVTIDEDKGPVTSINWTQDGLDLAVGLDNSEVQLWDFVSN--RQVRTLIGGHESRVGS 213
Query: 350 IDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRA-ATC-VKWSPMENKFAVG 523
+ W N + + T +D +D + +++V + C +KWS K A G
Sbjct: 214 LAW--NNHILTTGGMDGKIV----NNDVRIRSSIVGTYLGHTEEVCGLKWSESGKKLASG 267
Query: 524 SGARLISI 547
++ I
Sbjct: 268 GNYNVVHI 275
>At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; WD-repeat protein, carrot, PIR:T14352
Length = 444
Score = 32.3 bits (70), Expect = 0.30
Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 7/169 (4%)
Frame = +2
Query: 173 AQTLTFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNL-VEHDLRVMG 349
++ +T + P+T W +D +A +N+EV ++ N +Q L H+ RV
Sbjct: 159 SELVTIDEDKGPVTSINWTQDGLDLAVGLDNSEVQLWDCVSN--RQVRTLRGGHESRVGS 216
Query: 350 IDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRA-ATC-VKWSPMENKFAVG 523
+ W N I+T V +D + +++V + C +KWS NK A G
Sbjct: 217 LAW---DNHILTTGGMDGKIV---NNDVRIRSSIVETYLGHTEEVCGLKWSESGNKQASG 270
Query: 524 SGARLISI----CYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVA 658
++ I K+ W+ H + + V ++ W P L+A
Sbjct: 271 GNDNVVHIWDRSLASSKQTRQWL--HRFEEHTAAVRALAWCPFQASLLA 317
>At2g19580.1 68415.m02287 senescence-associated protein-related
similar to senescence-associated protein 5 [Hemerocallis
hybrid cultivar] gi|3551954|gb|AAC34855; contains a
transmembrane 4 family signature; rare (GC) splice donor
consensus found instead of (GT) at intron 2.
Length = 270
Score = 32.3 bits (70), Expect = 0.30
Identities = 16/68 (23%), Positives = 35/68 (51%)
Frame = +2
Query: 203 APITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIV 382
A C+ W+ D+SQ+ ++ N+ + + +W++ N ++ + V+ + W ++
Sbjct: 195 ADADCYLWSNDQSQLCYNCNSCKAGLLGNLRKEWRKANLIL--IITVVVLIWV----YVI 248
Query: 383 TCSVDRNA 406
CS RNA
Sbjct: 249 ACSAFRNA 256
>At5g27945.1 68418.m03364 transducin family protein / WD-40 repeat
family protein fizzy-related (FZR); contains 6 WD-40
repeats (PF00400); WD-repeat protein,
carrot,(gi:2253631) PIR:T14352
Length = 428
Score = 31.9 bits (69), Expect = 0.40
Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 2/127 (1%)
Frame = +2
Query: 173 AQTLTFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGI 352
++ +T D P+T W +D +A +N+EV ++ N +T H+ RV +
Sbjct: 143 SKLVTIDDENGPVTSINWTQDGLDLAVGLDNSEVQVWDCVSNRHVRTLR-GGHESRVGSL 201
Query: 353 DWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRA-ATC-VKWSPMENKFAVGS 526
W N + + T +D +D + ++++ + C +KWS K A G
Sbjct: 202 AW--NNHILTTGGMDGKIV----NNDVRIRSSIIGTYVGHTEEVCGLKWSESGKKLASGG 255
Query: 527 GARLISI 547
++ I
Sbjct: 256 NDNVVHI 262
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 31.1 bits (67), Expect = 0.70
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +2
Query: 305 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 484
K + + H ++ I W+ N NR+++ SVD + +W G + L + N T
Sbjct: 347 KPLHEFLGHSGDILDISWSKN-NRLLSASVDNSVRLWQIGCE----DCLGIFSHNNYVTS 401
Query: 485 VKWSPM-ENKFAVGS 526
V+++P+ ++ F GS
Sbjct: 402 VQFNPVDDDHFISGS 416
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 31.1 bits (67), Expect = 0.70
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +2
Query: 305 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 484
K + + H ++ I W+ N NR+++ SVD + +W G + L + N T
Sbjct: 347 KPLHEFLGHSGDILDISWSKN-NRLLSASVDNSVRLWQIGCE----DCLGIFSHNNYVTS 401
Query: 485 VKWSPM-ENKFAVGS 526
V+++P+ ++ F GS
Sbjct: 402 VQFNPVDDDHFISGS 416
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 31.1 bits (67), Expect = 0.70
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Frame = +2
Query: 329 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVK---WSP 499
H V G+ W+ + ++ + D ++W + +TT L R+ + VK W P
Sbjct: 265 HTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEEHTSAVKALAWCP 324
Query: 500 ME-NKFAVGSG 529
+ N A G G
Sbjct: 325 FQANLLATGGG 335
Score = 30.7 bits (66), Expect = 0.93
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +2
Query: 173 AQTLTFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLV-EHDLRVMG 349
++ +T + P+T W D +A NN+EV ++ N +Q L H RV
Sbjct: 173 SELVTIDEEKGPVTSINWAPDGRHVAVGLNNSEVQLWDSASN--RQLRTLKGGHQSRVGS 230
Query: 350 IDWAPNTNRIVTCSVD 397
+ W N + + T +D
Sbjct: 231 LAW--NNHILTTGGMD 244
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = +2
Query: 224 WNKDRSQIAFSPNNNEVHIYKK---EGNDWKQ-TNNLVEHDLRVMGIDWAP 364
W+ Q+A N+N VHI+ + N Q + L EH V + W P
Sbjct: 274 WSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEEHTSAVKALAWCP 324
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 31.1 bits (67), Expect = 0.70
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Frame = +2
Query: 329 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVK---WSP 499
H V G+ W+ + ++ + D ++W + +TT L R+ + VK W P
Sbjct: 255 HTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEEHTSAVKALAWCP 314
Query: 500 ME-NKFAVGSG 529
+ N A G G
Sbjct: 315 FQANLLATGGG 325
Score = 30.7 bits (66), Expect = 0.93
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +2
Query: 173 AQTLTFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLV-EHDLRVMG 349
++ +T + P+T W D +A NN+EV ++ N +Q L H RV
Sbjct: 163 SELVTIDEEKGPVTSINWAPDGRHVAVGLNNSEVQLWDSASN--RQLRTLKGGHQSRVGS 220
Query: 350 IDWAPNTNRIVTCSVD 397
+ W N + + T +D
Sbjct: 221 LAW--NNHILTTGGMD 234
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = +2
Query: 224 WNKDRSQIAFSPNNNEVHIYKK---EGNDWKQ-TNNLVEHDLRVMGIDWAP 364
W+ Q+A N+N VHI+ + N Q + L EH V + W P
Sbjct: 264 WSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEEHTSAVKALAWCP 314
>At3g42660.1 68416.m04436 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400); AND-1
protein - Homo sapiens, EMBL:AJ006266
Length = 951
Score = 31.1 bits (67), Expect = 0.70
Identities = 22/99 (22%), Positives = 38/99 (38%)
Frame = +2
Query: 224 WNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRN 403
W+ D +A N+V +Y + + K +H + + WAPN I T +D+
Sbjct: 203 WSPDGRTLAVPGLRNDVVMYDRFTGE-KLFALRGDHLEAICYLTWAPNGKYIATSGLDKQ 261
Query: 404 AYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAV 520
+W D + + C+ W P N +V
Sbjct: 262 VLLW----DVDKKQDIDRHKFEERICCMSWKPNGNALSV 296
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 31.1 bits (67), Expect = 0.70
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 293 GNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT-QGDD 430
G D+ +L H+ +V +D +++ I T S DR +WT G+D
Sbjct: 495 GRDFSLVKSLAGHESKVASLDITADSSCIATVSHDRTIKLWTSSGND 541
>At5g19920.1 68418.m02370 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
related to TipD protein (SP:O15736, PIR:T08602)
[Dictyostelium discoideum]; related to WD-repeat protein
RBAP1 (GI:9716495) [Zea mays]
Length = 656
Score = 30.7 bits (66), Expect = 0.93
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 9/136 (6%)
Frame = +2
Query: 290 EGNDWKQTNNLVEHDLR---VMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLL 460
E N WK T L+ DL VMG+ + N +++C DR +V G D +
Sbjct: 474 ENNAWKPT--LLHRDLHSSAVMGVTGMRHNNHVLSCGDDRR-FV---GFDAREEKVTFKH 527
Query: 461 RINRAATCVKWSP------MENKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTS 622
R++ T + +P M N + RL + + E + K +S + +
Sbjct: 528 RLDNRCTNIMPNPRDVNLVMVNTRQLDRQLRLYDVRLPQTELFSFGWKQESSESQSALIN 587
Query: 623 IDWHPNNILLVAGSAD 670
W P+ + + +GSAD
Sbjct: 588 QSWSPDGLHISSGSAD 603
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 30.7 bits (66), Expect = 0.93
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +2
Query: 305 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 484
K +L H ++ + W+ + +++ S+D+ +W D + T L L N TC
Sbjct: 497 KPVCSLKGHLDAILDLSWS-KSQLLLSSSMDKTVRLW----DIETKTCLKLFAHNDYVTC 551
Query: 485 VKWSPM-ENKFAVGS 526
+++SP+ EN F GS
Sbjct: 552 IQFSPVDENYFLSGS 566
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 30.7 bits (66), Expect = 0.93
Identities = 33/157 (21%), Positives = 62/157 (39%), Gaps = 1/157 (0%)
Frame = +2
Query: 203 APITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIV 382
+P+ A+N + + ++ + ++ E + K H +++ P +
Sbjct: 8 SPVDSVAFNSEEVLVLAGASSGVIKLWDLEES--KMVRAFTGHRSNCSAVEFHPFGEFLA 65
Query: 383 TCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGA-RLISICYFE 559
+ S D N VW D K R + +++SP + ++ V G ++ +
Sbjct: 66 SGSSDTNLRVW---DTRKKGCIQTYKGHTRGISTIEFSP-DGRWVVSGGLDNVVKVWDLT 121
Query: 560 KENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSAD 670
K + PIRS +D+HP LL GSAD
Sbjct: 122 AGKLLHEFKCHEGPIRS----LDFHPLEFLLATGSAD 154
>At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; similar to "Will die slowly" protein,
Drosophia; putative cdc20 protein - Arabidopsis
thaliana, EMBL:AF029262
Length = 411
Score = 30.3 bits (65), Expect = 1.2
Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 3/125 (2%)
Frame = +2
Query: 182 LTFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNL-VEHDLRVMGIDW 358
+T + P+T W +D +A +N+EV ++ N +Q L H+ RV + W
Sbjct: 128 VTIDEEEGPVTSINWTQDGLDLAIGLDNSEVQLWDCVSN--RQVRTLRGGHESRVGSLAW 185
Query: 359 APNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRA-ATC-VKWSPMENKFAVGSGA 532
N + + T +D +D + +++V + C +KWS K A G
Sbjct: 186 --NNHILTTGGMDGKIV----NNDVRIRSSIVETYLGHTEEVCGLKWSESGKKLASGGND 239
Query: 533 RLISI 547
++ I
Sbjct: 240 NVVHI 244
>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat
family protein similar to Transcriptional repressor
rco-1 (SP:P78706) [Neurospora crassa]; similar to
TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
Length = 648
Score = 30.3 bits (65), Expect = 1.2
Identities = 36/164 (21%), Positives = 64/164 (39%), Gaps = 9/164 (5%)
Frame = +2
Query: 206 PITCHAWNKDRSQIAFSPNNNEVHIYK-KEGNDWKQTNNLV---EHDLRVMGIDWAPNTN 373
P+T AW++D +IA + + I+ K G W ++ H + + ++ +
Sbjct: 329 PVTTCAWDRDGKRIAGGVGDGSIQIWSLKPG--WGSRPDIYVGKAHTDDITSVKFSSDGR 386
Query: 374 RIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLIS--- 544
+++ S D + VW + L T V +SP E G+ S
Sbjct: 387 ILLSRSFDGSLKVWDLRQMKEALKVFEGLPNYYPQTNVAFSPDEQIILTGTSVEKDSTTG 446
Query: 545 --ICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSAD 670
+C++++ V K P S+V WHP + A S D
Sbjct: 447 GLLCFYDRTKLEIVQKVGISP-TSSVVQCAWHPRLNQIFATSGD 489
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 614 VTSIDWHPNNILLVAGSAD 670
V S+DWHP LLV+G D
Sbjct: 271 VKSVDWHPTKSLLVSGGKD 289
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +2
Query: 329 HDLRVMGIDWAPNTNR-IVTCSVDRNAYVWTQGD---DGKWATTLVLLRINRAATCVKWS 496
HD + +DW P+ N I+T S D V+ + + +G + A CV+WS
Sbjct: 325 HDADLHCVDWNPHDNNLILTGSADNTVRVFDRRNLTSNGVGSPVYKFEGHRAAVLCVQWS 384
Query: 497 PMENKFAVGSGA 532
P + GS A
Sbjct: 385 P-DKSSVFGSSA 395
>At1g15850.1 68414.m01902 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
mRNA-associated protein mrnp 41 (SP:P78406) [Homo
sapiens]; similar to mitotic checkpoint protein
GI:9294423 from [Arabidopsis thaliana]
Length = 140
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/65 (24%), Positives = 27/65 (41%)
Frame = +2
Query: 206 PITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVT 385
P+ C AW D + + + + ++ Q + + HD I W P N +VT
Sbjct: 75 PVLCSAWKDDGTTVFTGGCDKQAKMWPLLSG--AQPSTVAMHDAPFNQIAWIPGMNLLVT 132
Query: 386 CSVDR 400
S D+
Sbjct: 133 GSWDK 137
>At5g50970.1 68418.m06321 WD-40 repeat family protein contains Pfam
profile PF00400: WD domain, G-beta repeat
Length = 512
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/70 (21%), Positives = 31/70 (44%)
Frame = +2
Query: 194 DSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTN 373
+S + + +W+ D I + +H++ N K T ++ H RV +W +
Sbjct: 436 ESQSALINQSWSPDGLYITSGSVDPVIHVFDIRYNARKPTQSIKAHQKRVFKAEWHYSQP 495
Query: 374 RIVTCSVDRN 403
+++ S D N
Sbjct: 496 LLISISSDLN 505
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 29.1 bits (62), Expect = 2.8
Identities = 27/122 (22%), Positives = 50/122 (40%)
Frame = +2
Query: 305 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 484
K L H + +D+ P + S+D N +W D K R
Sbjct: 92 KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIW---DIRKKGCIHTYKGHTRGVNV 148
Query: 485 VKWSPMENKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGS 664
++++P + ++ V G I + ++ +++ K + S+D+HP+ LL GS
Sbjct: 149 LRFTP-DGRWVVSGGEDNI-VKVWDLTAGKLLTEF--KSHEGQIQSLDFHPHEFLLATGS 204
Query: 665 AD 670
AD
Sbjct: 205 AD 206
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 29.1 bits (62), Expect = 2.8
Identities = 27/122 (22%), Positives = 50/122 (40%)
Frame = +2
Query: 305 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 484
K L H + +D+ P + S+D N +W D K R
Sbjct: 92 KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIW---DIRKKGCIHTYKGHTRGVNV 148
Query: 485 VKWSPMENKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGS 664
++++P + ++ V G I + ++ +++ K + S+D+HP+ LL GS
Sbjct: 149 LRFTP-DGRWVVSGGEDNI-VKVWDLTAGKLLTEF--KSHEGQIQSLDFHPHEFLLATGS 204
Query: 665 AD 670
AD
Sbjct: 205 AD 206
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/72 (22%), Positives = 27/72 (37%)
Frame = +2
Query: 314 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 493
+ LV H V G+ W+ + + + D VW ++ L L A + W
Sbjct: 292 SKLVGHKSEVCGLKWSHDDRELASGGNDNQLLVW---NNHSQQPILKLTEHTAAVKAITW 348
Query: 494 SPMENKFAVGSG 529
SP ++ G
Sbjct: 349 SPHQSSLLASGG 360
>At4g01860.2 68417.m00244 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Frame = +2
Query: 167 KMAQTLTFGDSCAPITCHAWNKDRSQIAFSPNN--NEVHIYKKEGNDWKQTNN---LVEH 331
+MA + + C T W S + + NE+ +++ G D ++ H
Sbjct: 168 RMAFEIQSPERCLLYTMRLWGDSISTLRIASGTIFNEIIVWRAVGLDGDNVDHGHYSASH 227
Query: 332 DLRVMG-------IDWAPNTNRIVTCSVDRNAYVW 415
LR+ G I W+ + ++IV+ S DR+A +W
Sbjct: 228 MLRLTGHEGSIFRIVWSLDGSKIVSVSDDRSARIW 262
>At4g01860.1 68417.m00243 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Frame = +2
Query: 167 KMAQTLTFGDSCAPITCHAWNKDRSQIAFSPNN--NEVHIYKKEGNDWKQTNN---LVEH 331
+MA + + C T W S + + NE+ +++ G D ++ H
Sbjct: 168 RMAFEIQSPERCLLYTMRLWGDSISTLRIASGTIFNEIIVWRAVGLDGDNVDHGHYSASH 227
Query: 332 DLRVMG-------IDWAPNTNRIVTCSVDRNAYVW 415
LR+ G I W+ + ++IV+ S DR+A +W
Sbjct: 228 MLRLTGHEGSIFRIVWSLDGSKIVSVSDDRSARIW 262
>At4g00090.1 68417.m00009 transducin family protein / WD-40 repeat
family protein similar to Transducin beta-like 2 protein
(WS beta-transducin repeats protein) (WS-betaTRP)
(Williams-Beuren syndrome chromosome region 13 protein)
(SP:Q9Y4P3) {Homo sapiens}
Length = 430
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +2
Query: 278 IYKKEGN--DWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 415
+Y+K+G+ + + L H V + ++PN+ +I+T S D + VW
Sbjct: 269 VYQKDGSVKEVSRVMQLKGHKSAVTWLCFSPNSEQIITASKDGSIRVW 316
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 587 HIKKPIRSTVTSIDWHPNNILLVAGSAD 670
H K + S+D+HP+ LL GSAD
Sbjct: 272 HEFKSHEGKIQSLDFHPHEFLLATGSAD 299
>At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to fizzy-related
protein (GI:5813825) Drosophila melanogaster,
PID:g2326419;
Length = 518
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/74 (21%), Positives = 34/74 (45%)
Frame = +2
Query: 194 DSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTN 373
D+C+ + AW+K+ +++ + ++ I + + L H RV+ + +P+
Sbjct: 419 DTCSQVCNLAWSKNVNELVSTHGYSQNQIIVWKYPTMSKIATLTGHTYRVLYLAVSPDGQ 478
Query: 374 RIVTCSVDRNAYVW 415
IVT + D W
Sbjct: 479 TIVTGAGDETLRFW 492
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 1/91 (1%)
Frame = +2
Query: 314 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 493
+ L H V G+ W+ + + + D +VW Q L A + W
Sbjct: 329 SKLAGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST---QPVLKYSEHTAAVKAIAW 385
Query: 494 SP-MENKFAVGSGARLISICYFEKENNWWVS 583
SP + A G G I ++ N +S
Sbjct: 386 SPHVHGLLASGGGTADRCIRFWNTTTNTHLS 416
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 350 IDWAPNTNRIVTCSVDRNAYVW 415
+DW PN N I T S D+ +W
Sbjct: 505 VDWHPNCNYIATGSSDKTVRLW 526
>At1g48880.1 68414.m05476 hypothetical protein
Length = 485
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/55 (23%), Positives = 24/55 (43%)
Frame = +2
Query: 437 WATTLVLLRINRAATCVKWSPMENKFAVGSGARLISICYFEKENNWWVSKHIKKP 601
W L+ + SP+EN ++ +++ IC F + +N + K I P
Sbjct: 431 WNEILLFFLFRQPVRSCSSSPLENSISILLCLKILLICRFSEVDNCNIEKKINDP 485
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +2
Query: 209 ITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAP-NTNRIVT 385
I C A + + S ++ + ++ E N W T H VM + + P +TN +
Sbjct: 102 IRCVAVHPTLPYVLSSSDDMLIKLWDWE-NGWACTQIFEGHSHYVMQVVFNPKDTNTFAS 160
Query: 386 CSVDRNAYVWTQG 424
S+DR +W G
Sbjct: 161 ASLDRTIKIWNLG 173
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +2
Query: 209 ITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAP-NTNRIVT 385
I C A + + S ++ + ++ E N W T H VM + + P +TN +
Sbjct: 102 IRCVAVHPTLPYVLSSSDDMLIKLWDWE-NGWACTQIFEGHSHYVMQVVFNPKDTNTFAS 160
Query: 386 CSVDRNAYVWTQG 424
S+DR +W G
Sbjct: 161 ASLDRTIKIWNLG 173
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +2
Query: 209 ITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAP-NTNRIVT 385
I C A + + S ++ + ++ E N W T H VM + + P +TN +
Sbjct: 102 IRCVAVHPTLPYVLSSSDDMLIKLWDWE-NGWACTQIFEGHSHYVMQVVFNPKDTNTFAS 160
Query: 386 CSVDRNAYVWTQG 424
S+DR +W G
Sbjct: 161 ASLDRTIKIWNLG 173
>At1g68210.1 68414.m07792 two-component responsive regulator family
protein / response regulator family protein contains
Pfam profile: PF00072 response regulator receiver domain
Length = 663
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = +2
Query: 194 DSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQ-TNNLVEHDLRVMGIDWAPNT 370
DS P+ K+ ++ +P N + + DW NL HD+ + +DW P+T
Sbjct: 386 DSFDPLVDECLMKENNRFLPNPTMNLLDT-DIDKMDWVSFIENLSHHDINMNHMDWDPST 444
Query: 371 NRIVTCSVDRN 403
V + N
Sbjct: 445 ANYVLPETNMN 455
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +2
Query: 473 AATCVKWSPMENKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILL 652
A CV +SP + A GSG + + E + K K + V ++ W P+ L
Sbjct: 111 AVLCVSFSPDGKQLASGSGDTTVRLWDLYTETPLFTCKGHK----NWVLTVAWSPDGKHL 166
Query: 653 VAGS 664
V+GS
Sbjct: 167 VSGS 170
>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
sapiens}; similar to WD repeat protein Srw1
-Schizosaccharomyces pombe,PID:d1023012
Length = 475
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/48 (22%), Positives = 23/48 (47%)
Frame = +2
Query: 224 WNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPN 367
W+ D ++A N+N++ ++ + + EH V I W+P+
Sbjct: 300 WSSDNRELASGGNDNKLFVWNQHST--QPVLRFCEHAAAVKAIAWSPH 345
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +2
Query: 329 HDLRVMGIDWAPN-TNRIVTCSVDRNAYVW 415
HD V +DW+P+ ++ T S D +W
Sbjct: 380 HDFEVTAVDWSPSEIGKVATASDDFTVRLW 409
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 317 NLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 415
+L H L VM ID + + IVT S D+N +W
Sbjct: 577 SLYGHKLPVMCIDISSDGELIVTGSQDKNLKIW 609
>At1g60390.1 68414.m06799 BURP domain-containing protein /
polygalacturonase, putative similar to polygalacturonase
isoenzyme 1 beta subunit GI:170480 from [Lycopersicon
esculentum]; contains Pfam profile PF03181: BURP domain
Length = 624
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Frame = +2
Query: 491 WSPMENKF-AVGSGARLISICY--FEKENNW 574
WSP F A+GSG I +C+ FE + W
Sbjct: 590 WSPSHGAFLALGSGPGQIEVCHWIFENDMTW 620
>At1g35210.1 68414.m04367 expressed protein
Length = 156
Score = 27.5 bits (58), Expect = 8.7
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = -1
Query: 667 SRASDE-QNVIGMPINRCHSRTNGLLNMLRHPPIIFLLKIAN*YQSSS*PDSKLVLHGRP 491
++A D+ +N + + H ++ G+ ++ + + +K A SS P S+ +L
Sbjct: 19 NKAEDKTKNAVFCKKHPKHRQSPGVCSLCLNERLSLFIKAA----SSRRPRSRQILSTSS 74
Query: 490 FHASRCSVDTQKNKSSCPFPII 425
S S D + SSCP PI+
Sbjct: 75 STTSSLSSDGSSSVSSCPSPIV 96
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,148,326
Number of Sequences: 28952
Number of extensions: 333019
Number of successful extensions: 1053
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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