Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11f03
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit ...    27   3.2  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    26   4.2  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    26   5.6  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    25   7.4  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.4  

>SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit
           Sec62 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 403 YSTLVQDVRSVDLDKVLFEWFKSETQNGNTINEEQLQSKATN 528
           +  L+ DV   D  K L+ W  S+++   T   ++L  KAT+
Sbjct: 200 FPNLLADVGFCDSFKPLWSWHNSKSEVKKTRKSKKLSKKATS 241


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 376 YILHKYTQTYSTLVQDVRSVDLDKVLFEWFKSETQNGNTINEEQLQSKATNLE 534
           Y+L  YT T   L   +  VD+D+ L   F    +N + +    + S+ T+LE
Sbjct: 355 YVLACYTSTIVGLPLSIEDVDIDQSLPNSFDFTLEN-DQVPPRLIASECTSLE 406


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 370 KEYILHKYTQTYSTLVQDVRSVDLDKVLFEWFKS 471
           K ++     + YS L  ++  VDLD + F WF S
Sbjct: 640 KSFVKESLPEIYSHL--ELLGVDLDAISFHWFLS 671


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 17/71 (23%), Positives = 32/71 (45%)
 Frame = +1

Query: 406 STLVQDVRSVDLDKVLFEWFKSETQNGNTINEEQLQSKATNLEKVRVIL*YRKPNS*RIN 585
           ST V+   + ++  +L +   S   N    N+++  S ++ L   R  L YR PN+  + 
Sbjct: 630 STFVKQANTPNITSLL-DGTCSSPPNNECFNDKEPDSSSSTLISDRQELEYRNPNAETVK 688

Query: 586 LSMVHLWSYIK 618
           L  +    + K
Sbjct: 689 LEEIPYNKFFK 699


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 467 LNHSKRTLSRSTERTSCTSVLYVCVYLC 384
           L+ +++ +S+S E T C   +Y  +Y C
Sbjct: 399 LSFAEKLISQSDESTLCKHYVYASLYAC 426


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,569,826
Number of Sequences: 5004
Number of extensions: 52564
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)