BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov11f03 (665 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit ... 27 3.2 SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 26 4.2 SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 26 5.6 SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 25 7.4 SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.4 >SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit Sec62 |Schizosaccharomyces pombe|chr 1|||Manual Length = 273 Score = 26.6 bits (56), Expect = 3.2 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = +1 Query: 403 YSTLVQDVRSVDLDKVLFEWFKSETQNGNTINEEQLQSKATN 528 + L+ DV D K L+ W S+++ T ++L KAT+ Sbjct: 200 FPNLLADVGFCDSFKPLWSWHNSKSEVKKTRKSKKLSKKATS 241 >SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster type |Schizosaccharomyces pombe|chr 2|||Manual Length = 827 Score = 26.2 bits (55), Expect = 4.2 Identities = 16/53 (30%), Positives = 26/53 (49%) Frame = +1 Query: 376 YILHKYTQTYSTLVQDVRSVDLDKVLFEWFKSETQNGNTINEEQLQSKATNLE 534 Y+L YT T L + VD+D+ L F +N + + + S+ T+LE Sbjct: 355 YVLACYTSTIVGLPLSIEDVDIDQSLPNSFDFTLEN-DQVPPRLIASECTSLE 406 >SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 772 Score = 25.8 bits (54), Expect = 5.6 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = +1 Query: 370 KEYILHKYTQTYSTLVQDVRSVDLDKVLFEWFKS 471 K ++ + YS L ++ VDLD + F WF S Sbjct: 640 KSFVKESLPEIYSHL--ELLGVDLDAISFHWFLS 671 >SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |Schizosaccharomyces pombe|chr 1|||Manual Length = 791 Score = 25.4 bits (53), Expect = 7.4 Identities = 17/71 (23%), Positives = 32/71 (45%) Frame = +1 Query: 406 STLVQDVRSVDLDKVLFEWFKSETQNGNTINEEQLQSKATNLEKVRVIL*YRKPNS*RIN 585 ST V+ + ++ +L + S N N+++ S ++ L R L YR PN+ + Sbjct: 630 STFVKQANTPNITSLL-DGTCSSPPNNECFNDKEPDSSSSTLISDRQELEYRNPNAETVK 688 Query: 586 LSMVHLWSYIK 618 L + + K Sbjct: 689 LEEIPYNKFFK 699 >SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 575 Score = 25.4 bits (53), Expect = 7.4 Identities = 9/28 (32%), Positives = 17/28 (60%) Frame = -1 Query: 467 LNHSKRTLSRSTERTSCTSVLYVCVYLC 384 L+ +++ +S+S E T C +Y +Y C Sbjct: 399 LSFAEKLISQSDESTLCKHYVYASLYAC 426 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,569,826 Number of Sequences: 5004 Number of extensions: 52564 Number of successful extensions: 160 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 159 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 160 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 303841898 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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