Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11f03
(665 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0127 - 18401461-18401464,18401868-18403876,18404060-184042... 32 0.47
09_06_0303 - 22149214-22149474,22150099-22150236,22150856-221511... 31 0.82
09_06_0142 - 21107878-21109104 29 4.4
08_02_1258 - 25670092-25670152,25671124-25671327,25671400-256716... 29 4.4
08_02_0821 + 21545013-21545082,21545660-21545769,21546302-215463... 28 5.8
06_03_1457 - 30287185-30287287,30287691-30287759,30288212-302883... 28 5.8
06_01_0255 - 1900508-1900549,1900728-1900817,1900902-1900995,190... 28 5.8
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549... 28 5.8
07_01_0072 - 525351-525494,526029-526256,526345-526458,527616-52... 28 7.7
03_06_0071 + 31465707-31466237,31467455-31468075,31468438-314685... 28 7.7
>01_05_0127 -
18401461-18401464,18401868-18403876,18404060-18404237,
18404381-18404958,18405609-18405611
Length = 923
Score = 31.9 bits (69), Expect = 0.47
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -3
Query: 360 HITYCLGIHTIFFCD 316
H+T CL +HT+FFCD
Sbjct: 708 HVTRCLKMHTVFFCD 722
>09_06_0303 -
22149214-22149474,22150099-22150236,22150856-22151100,
22151344-22151809
Length = 369
Score = 31.1 bits (67), Expect = 0.82
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +1
Query: 379 ILHKYTQTYSTLVQDVRSVDLDKVLFEWFKSETQNGNTINEEQLQSKATNLEK 537
+ ++ + Y++ QD+ S D+ K FE FK+ + N N+++ S L K
Sbjct: 42 LYERWRRVYASSSQDLPSSDMMKSRFEAFKANARQVNEFNKKEGMSYTLGLNK 94
>09_06_0142 - 21107878-21109104
Length = 408
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 280 INALDNGQCKMEIAKKYGVNPQTISNMYR 366
I A D+G K+++ KYG NP + + R
Sbjct: 161 IKAPDSGDAKVDLGLKYGANPDEVLPLLR 189
>08_02_1258 -
25670092-25670152,25671124-25671327,25671400-25671611,
25671701-25671749,25671833-25672612,25672696-25672767,
25672907-25672954,25673053-25673127,25673238-25673312,
25673614-25673668,25673931-25674016,25674759-25674988
Length = 648
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +1
Query: 355 NMYRKKEYILHKYTQTYSTLVQDVRSVDLDKVLFEWFKSETQNGNTINEEQLQSKATN 528
++++ +++ +KY T +V + R +L + F + QNG+ L S ATN
Sbjct: 167 DLHKNDDWLKNKYHPTNLEIVMESRRNELARTAANQFLQDLQNGSLDIGPGLTSSATN 224
>08_02_0821 +
21545013-21545082,21545660-21545769,21546302-21546376,
21546825-21546875
Length = 101
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 217 LMHIFPKKGYKKIGPLTKLQIINALDNGQCKMEI 318
L+H+ + GY K T + LDN KME+
Sbjct: 63 LIHVLEEAGYTKDSNFTLPDFMKILDNSDVKMEV 96
>06_03_1457 - 30287185-30287287,30287691-30287759,30288212-30288351,
30288447-30288641,30288743-30289363,30289688-30290257,
30290332-30293638,30293764-30293863,30293978-30295014,
30295256-30295604,30296299-30296374,30296456-30297022,
30297094-30297238,30298281-30298405,30298491-30298582,
30298646-30298828,30298946-30299058,30299499-30299649,
30299720-30299882
Length = 2701
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -2
Query: 340 DSHHIFLRFPSCIDHYLK 287
DS+ +F++FPS IDH +K
Sbjct: 2225 DSNALFMQFPSLIDHLIK 2242
>06_01_0255 -
1900508-1900549,1900728-1900817,1900902-1900995,
1901119-1901315,1901838-1901957,1902559-1902654,
1902744-1902869,1903125-1903221,1904476-1904546,
1904629-1904724,1904803-1904955,1904993-1905136
Length = 441
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +1
Query: 301 QCKMEIAKKYGVNPQTISN--MYRKKEYILHKYTQTYSTLVQDVRSVDLDKVLFEWFKSE 474
QC+ I KK+ + P +N M K ++H++ TY + D+ +D K ++E K+
Sbjct: 48 QCR-SILKKFSIFPTAYNNFRMSAKIAPVIHEW--TYDAMCHDLLEMDGQKYIYEVSKAG 104
Query: 475 TQ 480
++
Sbjct: 105 SE 106
>01_06_0795 -
32051794-32053362,32053452-32053595,32054102-32054965,
32055335-32055892
Length = 1044
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = -1
Query: 539 TFSRFVALLCNCSSFIVFPF*VSDLNHSKRTLSRSTERTSCTSVLYVCVYLC 384
T+ + A+ NC+ +V V+ LNH +R L RS ER + + + LC
Sbjct: 546 TWEKLSAIRANCAIELVLDECVALLNHMRR-LKRSAERAAASQGHGPTIRLC 596
>07_01_0072 -
525351-525494,526029-526256,526345-526458,527616-527747,
529086-529265,529376-529507,529879-530055,530536-530718,
530894-530938,531192-531306,531770-532128,532700-532939
Length = 682
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 280 INALDNGQCKMEIAKKYGVNPQTISNMYRKKEYILHKYTQ 399
I + D + K E + G N + S + RKKE + KYTQ
Sbjct: 463 IESKDPEKVKQEKERALGQNIRAHSILQRKKEKVSRKYTQ 502
>03_06_0071 +
31465707-31466237,31467455-31468075,31468438-31468520,
31468895-31468979
Length = 439
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/35 (31%), Positives = 24/35 (68%)
Frame = +1
Query: 439 LDKVLFEWFKSETQNGNTINEEQLQSKATNLEKVR 543
LDK+L WF ++TQ+ ++ + +Q+K T++ ++
Sbjct: 300 LDKILKTWFSNKTQDSKSM--QFIQAKVTSIPLIK 332
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,824,124
Number of Sequences: 37544
Number of extensions: 273992
Number of successful extensions: 560
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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