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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11f03
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9321| Best HMM Match : DDE (HMM E-Value=5.40004e-41)                41   0.001
SB_38407| Best HMM Match : DDE (HMM E-Value=5.40004e-41)               41   0.001
SB_46818| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.21 
SB_9895| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.64 
SB_15469| Best HMM Match : RVT_1 (HMM E-Value=0.00014)                 31   1.1  
SB_14941| Best HMM Match : SH3_1 (HMM E-Value=1.1e-12)                 29   2.6  
SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_32019| Best HMM Match : Ion_trans_2 (HMM E-Value=1.6e-15)           29   4.5  
SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_51601| Best HMM Match : Toxin_23 (HMM E-Value=0.15)                 28   7.9  

>SB_9321| Best HMM Match : DDE (HMM E-Value=5.40004e-41)
          Length = 700

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
 Frame = +1

Query: 235 KKGYKKIGPLTKLQIINALDNG-QCKMEIAKKYGVNPQTISNMYRKKEYILHKYTQTYST 411
           KK  +++    K+Q+I+    G + + ++A  Y +   T+  + +KK+ IL  Y Q    
Sbjct: 60  KKRRRELSLSEKIQLIHESQTGTKSQRKLADIYQIGKTTVHEILKKKDDILKAYEQNVDG 119

Query: 412 LVQDV--RSV--DLDKVLFEWFKSETQNGNTINEEQLQSKA 522
             + V  RS   D++++ ++W++     GN I+   LQ KA
Sbjct: 120 GRKRVCTRSAYSDINRLAWQWYERMRAQGNQISGPMLQEKA 160


>SB_38407| Best HMM Match : DDE (HMM E-Value=5.40004e-41)
          Length = 700

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
 Frame = +1

Query: 235 KKGYKKIGPLTKLQIINALDNG-QCKMEIAKKYGVNPQTISNMYRKKEYILHKYTQTYST 411
           KK  +++    K+Q+I+    G + + ++A  Y +   T+  + +KK+ IL  Y Q    
Sbjct: 60  KKRRRELSLSEKIQLIHESQTGTKSQRKLADIYQIGKTTVHEILKKKDDILKAYEQNVDG 119

Query: 412 LVQDV--RSV--DLDKVLFEWFKSETQNGNTINEEQLQSKA 522
             + V  RS   D++++ ++W++     GN I+   LQ KA
Sbjct: 120 GRKRVCTRSAYSDINRLAWQWYERMRAQGNQISGPMLQEKA 160


>SB_46818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 9/126 (7%)
 Frame = +1

Query: 220 MHIFPKKGYKKIGPLTKLQIINALDN------GQCKMEIA--KKYGVNPQTISNMYRKKE 375
           MH FP KG  K G    +Q   A D        + K   A  ++YGVN   I    + KE
Sbjct: 135 MH-FPPKGKPKKGDTYDMQSYTANDKLKIIGFAETKGNRATVREYGVNEANIRQSRKNKE 193

Query: 376 YILHKYTQTYSTLVQDVRSVDLDKVLFEWFKSETQNGNTINEEQLQSKATNLEK-VRVIL 552
            +        +   +     +L+  L  W + + +NG  I    ++ KA +L K VRV  
Sbjct: 194 NLKMMPLMKRAAHGRKAAFPELEVDLLAWIQEKRKNGLAILPSLIRMKALDLAKEVRV-- 251

Query: 553 *YRKPN 570
            +R PN
Sbjct: 252 -FRPPN 256


>SB_9895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1547

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -2

Query: 454  RELYRGLQNVHLVLVCCMSVCTCVKYTLSSCTYYLLFGDSHHIFLRFPSCI 302
            R LY+  Q + + +V  +SVC CVK     C+Y+  F     I L   S +
Sbjct: 979  RPLYQTSQLLFIGVVVFLSVCECVKAYKRGCSYFCRFWSWMDIILMCSSLL 1029


>SB_15469| Best HMM Match : RVT_1 (HMM E-Value=0.00014)
          Length = 709

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 5/115 (4%)
 Frame = +1

Query: 127 IQLKFSFSNKNSVRMSFW---NPGTKNEEDLSQLMHIFPKKGYKKIGPLTKLQIINALDN 297
           I LKF  S +N+   SFW   N  T+N+E +  L          KI  +     I  +DN
Sbjct: 216 ITLKFKSSKENARGPSFWKFNNSLTENQEYIDMLT--------TKINEIKSSLTIEGIDN 267

Query: 298 GQCKMEIAKKYGVNPQTI--SNMYRKKEYILHKYTQTYSTLVQDVRSVDLDKVLF 456
            Q + E+  KY +   TI  S +  ++    +K  +     ++ +   + DK L+
Sbjct: 268 PQLRSELI-KYEIRKFTIGYSKVLARQRRCEYKDLEEKIKSIEQIEDWESDKSLY 321


>SB_14941| Best HMM Match : SH3_1 (HMM E-Value=1.1e-12)
          Length = 469

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = +1

Query: 133 LKFSFSNKNSVRMSFWNPGTKNEEDLSQLMHIFPKKGYKKIGPLTKLQIINALDNGQCKM 312
           + F F NKN+   S +N   K +E   Q+      +G +K GP T    +  L+  + K 
Sbjct: 50  INFEFHNKNTTSSSAFN-AAKRKEKAMQVKK--KDQGKEKKGPATSYMNMEFLEKTRKKQ 106

Query: 313 EIAKKYG 333
            + K+ G
Sbjct: 107 PLPKRVG 113


>SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1995

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = +1

Query: 268 KLQIINALDNGQCKMEIAKKYGVNPQTISNMYRKKEYILHKYTQTYSTLVQDVRSVDLDK 447
           K++++     G  + ++A ++ V+   ISN+ +KK  I   + Q  ++  +   S   D+
Sbjct: 15  KVEVLKLAAGGASQRKLADQFKVSKTQISNIIKKKHAIEVAFEQNSNSEKRRFVSAPNDR 74

Query: 448 V---LFEWF 465
           +   ++EWF
Sbjct: 75  INDAIWEWF 83


>SB_32019| Best HMM Match : Ion_trans_2 (HMM E-Value=1.6e-15)
          Length = 299

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -1

Query: 437 STERTSCTSVLYVCVYLCKIYSFFLYILLIVWGFTPYFFA 318
           S  R   TSV+ V VYLC +    +Y  L  W F   F+A
Sbjct: 123 SLRRCLATSVILVTVYLCLMAGLGMY--LEEWSFLDSFYA 160


>SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = -1

Query: 488 FPF*VSDLNHSKRTLSRSTERTSCTSVLYVCVYLCKIYSFFL 363
           FPF V     SK+  +++ ++T+  SV+ + + +C++ SFFL
Sbjct: 382 FPFAVP-CQPSKKRKAKTIDQTTGMSVMNLNITICEVMSFFL 422


>SB_51601| Best HMM Match : Toxin_23 (HMM E-Value=0.15)
          Length = 149

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -1

Query: 473 SDLNHSKRTLSRSTERTSCTSVLYVCVYLCKIYSFFLYILLI 348
           +D N ++R L+  T+ +   S     V LC+   FF+ +L++
Sbjct: 9   TDYNKNERILNERTQLSEFESKSLDMVLLCRFIGFFIVVLVL 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,308,909
Number of Sequences: 59808
Number of extensions: 359322
Number of successful extensions: 756
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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