BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov11f03 (665 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_9321| Best HMM Match : DDE (HMM E-Value=5.40004e-41) 41 0.001 SB_38407| Best HMM Match : DDE (HMM E-Value=5.40004e-41) 41 0.001 SB_46818| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21 SB_9895| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64 SB_15469| Best HMM Match : RVT_1 (HMM E-Value=0.00014) 31 1.1 SB_14941| Best HMM Match : SH3_1 (HMM E-Value=1.1e-12) 29 2.6 SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4 SB_32019| Best HMM Match : Ion_trans_2 (HMM E-Value=1.6e-15) 29 4.5 SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5 SB_51601| Best HMM Match : Toxin_23 (HMM E-Value=0.15) 28 7.9 >SB_9321| Best HMM Match : DDE (HMM E-Value=5.40004e-41) Length = 700 Score = 40.7 bits (91), Expect = 0.001 Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 5/101 (4%) Frame = +1 Query: 235 KKGYKKIGPLTKLQIINALDNG-QCKMEIAKKYGVNPQTISNMYRKKEYILHKYTQTYST 411 KK +++ K+Q+I+ G + + ++A Y + T+ + +KK+ IL Y Q Sbjct: 60 KKRRRELSLSEKIQLIHESQTGTKSQRKLADIYQIGKTTVHEILKKKDDILKAYEQNVDG 119 Query: 412 LVQDV--RSV--DLDKVLFEWFKSETQNGNTINEEQLQSKA 522 + V RS D++++ ++W++ GN I+ LQ KA Sbjct: 120 GRKRVCTRSAYSDINRLAWQWYERMRAQGNQISGPMLQEKA 160 >SB_38407| Best HMM Match : DDE (HMM E-Value=5.40004e-41) Length = 700 Score = 40.7 bits (91), Expect = 0.001 Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 5/101 (4%) Frame = +1 Query: 235 KKGYKKIGPLTKLQIINALDNG-QCKMEIAKKYGVNPQTISNMYRKKEYILHKYTQTYST 411 KK +++ K+Q+I+ G + + ++A Y + T+ + +KK+ IL Y Q Sbjct: 60 KKRRRELSLSEKIQLIHESQTGTKSQRKLADIYQIGKTTVHEILKKKDDILKAYEQNVDG 119 Query: 412 LVQDV--RSV--DLDKVLFEWFKSETQNGNTINEEQLQSKA 522 + V RS D++++ ++W++ GN I+ LQ KA Sbjct: 120 GRKRVCTRSAYSDINRLAWQWYERMRAQGNQISGPMLQEKA 160 >SB_46818| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 295 Score = 33.1 bits (72), Expect = 0.21 Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 9/126 (7%) Frame = +1 Query: 220 MHIFPKKGYKKIGPLTKLQIINALDN------GQCKMEIA--KKYGVNPQTISNMYRKKE 375 MH FP KG K G +Q A D + K A ++YGVN I + KE Sbjct: 135 MH-FPPKGKPKKGDTYDMQSYTANDKLKIIGFAETKGNRATVREYGVNEANIRQSRKNKE 193 Query: 376 YILHKYTQTYSTLVQDVRSVDLDKVLFEWFKSETQNGNTINEEQLQSKATNLEK-VRVIL 552 + + + +L+ L W + + +NG I ++ KA +L K VRV Sbjct: 194 NLKMMPLMKRAAHGRKAAFPELEVDLLAWIQEKRKNGLAILPSLIRMKALDLAKEVRV-- 251 Query: 553 *YRKPN 570 +R PN Sbjct: 252 -FRPPN 256 >SB_9895| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1547 Score = 31.5 bits (68), Expect = 0.64 Identities = 17/51 (33%), Positives = 25/51 (49%) Frame = -2 Query: 454 RELYRGLQNVHLVLVCCMSVCTCVKYTLSSCTYYLLFGDSHHIFLRFPSCI 302 R LY+ Q + + +V +SVC CVK C+Y+ F I L S + Sbjct: 979 RPLYQTSQLLFIGVVVFLSVCECVKAYKRGCSYFCRFWSWMDIILMCSSLL 1029 >SB_15469| Best HMM Match : RVT_1 (HMM E-Value=0.00014) Length = 709 Score = 30.7 bits (66), Expect = 1.1 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 5/115 (4%) Frame = +1 Query: 127 IQLKFSFSNKNSVRMSFW---NPGTKNEEDLSQLMHIFPKKGYKKIGPLTKLQIINALDN 297 I LKF S +N+ SFW N T+N+E + L KI + I +DN Sbjct: 216 ITLKFKSSKENARGPSFWKFNNSLTENQEYIDMLT--------TKINEIKSSLTIEGIDN 267 Query: 298 GQCKMEIAKKYGVNPQTI--SNMYRKKEYILHKYTQTYSTLVQDVRSVDLDKVLF 456 Q + E+ KY + TI S + ++ +K + ++ + + DK L+ Sbjct: 268 PQLRSELI-KYEIRKFTIGYSKVLARQRRCEYKDLEEKIKSIEQIEDWESDKSLY 321 >SB_14941| Best HMM Match : SH3_1 (HMM E-Value=1.1e-12) Length = 469 Score = 29.5 bits (63), Expect = 2.6 Identities = 19/67 (28%), Positives = 31/67 (46%) Frame = +1 Query: 133 LKFSFSNKNSVRMSFWNPGTKNEEDLSQLMHIFPKKGYKKIGPLTKLQIINALDNGQCKM 312 + F F NKN+ S +N K +E Q+ +G +K GP T + L+ + K Sbjct: 50 INFEFHNKNTTSSSAFN-AAKRKEKAMQVKK--KDQGKEKKGPATSYMNMEFLEKTRKKQ 106 Query: 313 EIAKKYG 333 + K+ G Sbjct: 107 PLPKRVG 113 >SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1995 Score = 29.1 bits (62), Expect = 3.4 Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Frame = +1 Query: 268 KLQIINALDNGQCKMEIAKKYGVNPQTISNMYRKKEYILHKYTQTYSTLVQDVRSVDLDK 447 K++++ G + ++A ++ V+ ISN+ +KK I + Q ++ + S D+ Sbjct: 15 KVEVLKLAAGGASQRKLADQFKVSKTQISNIIKKKHAIEVAFEQNSNSEKRRFVSAPNDR 74 Query: 448 V---LFEWF 465 + ++EWF Sbjct: 75 INDAIWEWF 83 >SB_32019| Best HMM Match : Ion_trans_2 (HMM E-Value=1.6e-15) Length = 299 Score = 28.7 bits (61), Expect = 4.5 Identities = 16/40 (40%), Positives = 20/40 (50%) Frame = -1 Query: 437 STERTSCTSVLYVCVYLCKIYSFFLYILLIVWGFTPYFFA 318 S R TSV+ V VYLC + +Y L W F F+A Sbjct: 123 SLRRCLATSVILVTVYLCLMAGLGMY--LEEWSFLDSFYA 160 >SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 674 Score = 28.7 bits (61), Expect = 4.5 Identities = 14/42 (33%), Positives = 27/42 (64%) Frame = -1 Query: 488 FPF*VSDLNHSKRTLSRSTERTSCTSVLYVCVYLCKIYSFFL 363 FPF V SK+ +++ ++T+ SV+ + + +C++ SFFL Sbjct: 382 FPFAVP-CQPSKKRKAKTIDQTTGMSVMNLNITICEVMSFFL 422 >SB_51601| Best HMM Match : Toxin_23 (HMM E-Value=0.15) Length = 149 Score = 27.9 bits (59), Expect = 7.9 Identities = 12/42 (28%), Positives = 23/42 (54%) Frame = -1 Query: 473 SDLNHSKRTLSRSTERTSCTSVLYVCVYLCKIYSFFLYILLI 348 +D N ++R L+ T+ + S V LC+ FF+ +L++ Sbjct: 9 TDYNKNERILNERTQLSEFESKSLDMVLLCRFIGFFIVVLVL 50 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,308,909 Number of Sequences: 59808 Number of extensions: 359322 Number of successful extensions: 756 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 701 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 756 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1717720750 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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