Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11f03
(665 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9321| Best HMM Match : DDE (HMM E-Value=5.40004e-41) 41 0.001
SB_38407| Best HMM Match : DDE (HMM E-Value=5.40004e-41) 41 0.001
SB_46818| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_9895| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_15469| Best HMM Match : RVT_1 (HMM E-Value=0.00014) 31 1.1
SB_14941| Best HMM Match : SH3_1 (HMM E-Value=1.1e-12) 29 2.6
SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_32019| Best HMM Match : Ion_trans_2 (HMM E-Value=1.6e-15) 29 4.5
SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_51601| Best HMM Match : Toxin_23 (HMM E-Value=0.15) 28 7.9
>SB_9321| Best HMM Match : DDE (HMM E-Value=5.40004e-41)
Length = 700
Score = 40.7 bits (91), Expect = 0.001
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Frame = +1
Query: 235 KKGYKKIGPLTKLQIINALDNG-QCKMEIAKKYGVNPQTISNMYRKKEYILHKYTQTYST 411
KK +++ K+Q+I+ G + + ++A Y + T+ + +KK+ IL Y Q
Sbjct: 60 KKRRRELSLSEKIQLIHESQTGTKSQRKLADIYQIGKTTVHEILKKKDDILKAYEQNVDG 119
Query: 412 LVQDV--RSV--DLDKVLFEWFKSETQNGNTINEEQLQSKA 522
+ V RS D++++ ++W++ GN I+ LQ KA
Sbjct: 120 GRKRVCTRSAYSDINRLAWQWYERMRAQGNQISGPMLQEKA 160
>SB_38407| Best HMM Match : DDE (HMM E-Value=5.40004e-41)
Length = 700
Score = 40.7 bits (91), Expect = 0.001
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Frame = +1
Query: 235 KKGYKKIGPLTKLQIINALDNG-QCKMEIAKKYGVNPQTISNMYRKKEYILHKYTQTYST 411
KK +++ K+Q+I+ G + + ++A Y + T+ + +KK+ IL Y Q
Sbjct: 60 KKRRRELSLSEKIQLIHESQTGTKSQRKLADIYQIGKTTVHEILKKKDDILKAYEQNVDG 119
Query: 412 LVQDV--RSV--DLDKVLFEWFKSETQNGNTINEEQLQSKA 522
+ V RS D++++ ++W++ GN I+ LQ KA
Sbjct: 120 GRKRVCTRSAYSDINRLAWQWYERMRAQGNQISGPMLQEKA 160
>SB_46818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 33.1 bits (72), Expect = 0.21
Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 9/126 (7%)
Frame = +1
Query: 220 MHIFPKKGYKKIGPLTKLQIINALDN------GQCKMEIA--KKYGVNPQTISNMYRKKE 375
MH FP KG K G +Q A D + K A ++YGVN I + KE
Sbjct: 135 MH-FPPKGKPKKGDTYDMQSYTANDKLKIIGFAETKGNRATVREYGVNEANIRQSRKNKE 193
Query: 376 YILHKYTQTYSTLVQDVRSVDLDKVLFEWFKSETQNGNTINEEQLQSKATNLEK-VRVIL 552
+ + + +L+ L W + + +NG I ++ KA +L K VRV
Sbjct: 194 NLKMMPLMKRAAHGRKAAFPELEVDLLAWIQEKRKNGLAILPSLIRMKALDLAKEVRV-- 251
Query: 553 *YRKPN 570
+R PN
Sbjct: 252 -FRPPN 256
>SB_9895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1547
Score = 31.5 bits (68), Expect = 0.64
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -2
Query: 454 RELYRGLQNVHLVLVCCMSVCTCVKYTLSSCTYYLLFGDSHHIFLRFPSCI 302
R LY+ Q + + +V +SVC CVK C+Y+ F I L S +
Sbjct: 979 RPLYQTSQLLFIGVVVFLSVCECVKAYKRGCSYFCRFWSWMDIILMCSSLL 1029
>SB_15469| Best HMM Match : RVT_1 (HMM E-Value=0.00014)
Length = 709
Score = 30.7 bits (66), Expect = 1.1
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 5/115 (4%)
Frame = +1
Query: 127 IQLKFSFSNKNSVRMSFW---NPGTKNEEDLSQLMHIFPKKGYKKIGPLTKLQIINALDN 297
I LKF S +N+ SFW N T+N+E + L KI + I +DN
Sbjct: 216 ITLKFKSSKENARGPSFWKFNNSLTENQEYIDMLT--------TKINEIKSSLTIEGIDN 267
Query: 298 GQCKMEIAKKYGVNPQTI--SNMYRKKEYILHKYTQTYSTLVQDVRSVDLDKVLF 456
Q + E+ KY + TI S + ++ +K + ++ + + DK L+
Sbjct: 268 PQLRSELI-KYEIRKFTIGYSKVLARQRRCEYKDLEEKIKSIEQIEDWESDKSLY 321
>SB_14941| Best HMM Match : SH3_1 (HMM E-Value=1.1e-12)
Length = 469
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +1
Query: 133 LKFSFSNKNSVRMSFWNPGTKNEEDLSQLMHIFPKKGYKKIGPLTKLQIINALDNGQCKM 312
+ F F NKN+ S +N K +E Q+ +G +K GP T + L+ + K
Sbjct: 50 INFEFHNKNTTSSSAFN-AAKRKEKAMQVKK--KDQGKEKKGPATSYMNMEFLEKTRKKQ 106
Query: 313 EIAKKYG 333
+ K+ G
Sbjct: 107 PLPKRVG 113
>SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1995
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +1
Query: 268 KLQIINALDNGQCKMEIAKKYGVNPQTISNMYRKKEYILHKYTQTYSTLVQDVRSVDLDK 447
K++++ G + ++A ++ V+ ISN+ +KK I + Q ++ + S D+
Sbjct: 15 KVEVLKLAAGGASQRKLADQFKVSKTQISNIIKKKHAIEVAFEQNSNSEKRRFVSAPNDR 74
Query: 448 V---LFEWF 465
+ ++EWF
Sbjct: 75 INDAIWEWF 83
>SB_32019| Best HMM Match : Ion_trans_2 (HMM E-Value=1.6e-15)
Length = 299
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -1
Query: 437 STERTSCTSVLYVCVYLCKIYSFFLYILLIVWGFTPYFFA 318
S R TSV+ V VYLC + +Y L W F F+A
Sbjct: 123 SLRRCLATSVILVTVYLCLMAGLGMY--LEEWSFLDSFYA 160
>SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 674
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/42 (33%), Positives = 27/42 (64%)
Frame = -1
Query: 488 FPF*VSDLNHSKRTLSRSTERTSCTSVLYVCVYLCKIYSFFL 363
FPF V SK+ +++ ++T+ SV+ + + +C++ SFFL
Sbjct: 382 FPFAVP-CQPSKKRKAKTIDQTTGMSVMNLNITICEVMSFFL 422
>SB_51601| Best HMM Match : Toxin_23 (HMM E-Value=0.15)
Length = 149
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -1
Query: 473 SDLNHSKRTLSRSTERTSCTSVLYVCVYLCKIYSFFLYILLI 348
+D N ++R L+ T+ + S V LC+ FF+ +L++
Sbjct: 9 TDYNKNERILNERTQLSEFESKSLDMVLLCRFIGFFIVVLVL 50
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,308,909
Number of Sequences: 59808
Number of extensions: 359322
Number of successful extensions: 756
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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