Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11f03
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical ...    32   0.32 
AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical ...    32   0.32 
AC006651-8|AAX22286.1|  716|Caenorhabditis elegans Hypothetical ...    31   0.73 
AF098996-3|AAC68707.2|  349|Caenorhabditis elegans Serpentine re...    29   3.9  
AF047661-4|AAC04435.2|  931|Caenorhabditis elegans Hypothetical ...    27   9.1  
AF003146-2|AAB54201.1|  228|Caenorhabditis elegans Hypothetical ...    27   9.1  

>AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical
           protein H06I04.3c protein.
          Length = 786

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 9/114 (7%)
 Frame = +1

Query: 121 VGIQLKFSFSNKNSVRMSFWNPGTKNEEDLSQLMHIFPKKGYKKIGPLTKLQI------- 279
           +G Q+ +S     ++    WN    N+EDL        KK Y K  P+TK Q+       
Sbjct: 636 IGEQMIYSAKAARNLEDEAWNRYANNDEDLPDWFADDEKKHYFKQTPVTKEQVALYRERM 695

Query: 280 --INALDNGQCKMEIAKKYGVNPQTISNMYRKKEYILHKYTQTYSTLVQDVRSV 435
              NA  + +     A+K     + + +  +K E IL      +S  V++++ V
Sbjct: 696 REFNARPSKKVAEAKARKQKKMQRKLESAKKKAEGILENDQMEHSEKVREMKKV 749


>AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical
           protein H06I04.3a protein.
          Length = 833

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 9/114 (7%)
 Frame = +1

Query: 121 VGIQLKFSFSNKNSVRMSFWNPGTKNEEDLSQLMHIFPKKGYKKIGPLTKLQI------- 279
           +G Q+ +S     ++    WN    N+EDL        KK Y K  P+TK Q+       
Sbjct: 636 IGEQMIYSAKAARNLEDEAWNRYANNDEDLPDWFADDEKKHYFKQTPVTKEQVALYRERM 695

Query: 280 --INALDNGQCKMEIAKKYGVNPQTISNMYRKKEYILHKYTQTYSTLVQDVRSV 435
              NA  + +     A+K     + + +  +K E IL      +S  V++++ V
Sbjct: 696 REFNARPSKKVAEAKARKQKKMQRKLESAKKKAEGILENDQMEHSEKVREMKKV 749


>AC006651-8|AAX22286.1|  716|Caenorhabditis elegans Hypothetical
           protein H06I04.3b protein.
          Length = 716

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +1

Query: 121 VGIQLKFSFSNKNSVRMSFWNPGTKNEEDLSQLMHIFPKKGYKKIGPLTKLQI 279
           +G Q+ +S     ++    WN    N+EDL        KK Y K  P+TK Q+
Sbjct: 636 IGEQMIYSAKAARNLEDEAWNRYANNDEDLPDWFADDEKKHYFKQTPVTKEQV 688


>AF098996-3|AAC68707.2|  349|Caenorhabditis elegans Serpentine
           receptor, class w protein79 protein.
          Length = 349

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -1

Query: 446 LSRSTERTSCTSVLYVCVYLCKIYSFFLYILLIVWGFTPYF 324
           L+RS+ RTS T+ L + + +C I   +L IL  +W    YF
Sbjct: 42  LTRSSMRTSSTNSLMIGIAICDI--LYLSILAELWIRNAYF 80


>AF047661-4|AAC04435.2|  931|Caenorhabditis elegans Hypothetical
           protein M70.1 protein.
          Length = 931

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
 Frame = +1

Query: 262 LTKLQIINALDNGQCKMEIAKKYGVNP--QTISNMYRKKEYILHKYTQTYSTLVQDVRSV 435
           ++K   +N++D     +E  KK  V    + +S +  +   I  KYT  +S  VQD++ +
Sbjct: 276 ISKTSDVNSMD---ADIENIKKLPVTTIFKMMSTVASRSTNIFGKYTAGFSNGVQDLQKI 332

Query: 436 DLDKVLFEWFKSETQN 483
           ++D +  EW + +T N
Sbjct: 333 EVD-LKDEWIQ-KTMN 346


>AF003146-2|AAB54201.1|  228|Caenorhabditis elegans Hypothetical
           protein F56F4.4 protein.
          Length = 228

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/81 (23%), Positives = 35/81 (43%)
 Frame = +1

Query: 187 GTKNEEDLSQLMHIFPKKGYKKIGPLTKLQIINALDNGQCKMEIAKKYGVNPQTISNMYR 366
           G K+EE   +L     K+   ++  + +LQI     NG    E  ++     + +S   +
Sbjct: 152 GYKDEEKKKEL-----KRKLDEVTKIVELQIAEKEQNGLNHKEAKRETDAARRKLSKEIK 206

Query: 367 KKEYILHKYTQTYSTLVQDVR 429
           K   + HKY  T    V+ ++
Sbjct: 207 KSNNMQHKYKSTSRETVKKIK 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,007,300
Number of Sequences: 27780
Number of extensions: 286641
Number of successful extensions: 808
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)