Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11f03
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   1.1  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               23   2.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.6  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   4.6  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   4.6  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 443 SRSTERTSCTSVLYVCVYLC 384
           SRSTER    SV  +C  LC
Sbjct: 278 SRSTERMIAASVNLICHILC 297


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 201 RRSISINAYLSQERI*KNRSFDKVTNN*RF 290
           R++ISI+  +  E I  N+S DK  N   F
Sbjct: 105 RKNISIDVKMLSECINANKSTDKCENGLNF 134



 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 422 MYVL*TSIKFSLNGLNQKLKMEIL*MK 502
           +Y+L  ++    NG+N+ LK+  + MK
Sbjct: 9   VYILSVAVIIRANGINEILKIMAVSMK 35


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 557 TESQTVRGST*VWYTYGATSNSG 625
           TE   +  S+ VW+ +G   NSG
Sbjct: 603 TEEDALNLSSAVWFAWGVLLNSG 625


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 56  NKNY*NYLNALRKRFLLNITRMSV 127
           N NY N    L K +++NI ++ V
Sbjct: 106 NNNYNNNYKKLYKNYIINIEQIPV 129


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 56  NKNY*NYLNALRKRFLLNITRMSV 127
           N NY N    L K +++NI ++ V
Sbjct: 106 NNNYNNNYKKLYKNYIINIEQIPV 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,407
Number of Sequences: 438
Number of extensions: 3674
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)