BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov11f03 (665 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g59740.1 68414.m06726 proton-dependent oligopeptide transport... 29 2.1 At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL... 28 6.4 At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 27 8.5 >At1g59740.1 68414.m06726 proton-dependent oligopeptide transport (POT) family protein contains Pfam profile: PF00854 POT family Length = 591 Score = 29.5 bits (63), Expect = 2.1 Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%) Frame = -1 Query: 323 FAISILH*PLSKAL-IICNFVKGPIFLYPFLG 231 + I+ +H PLSKA I+ NFV G IF++ LG Sbjct: 72 YVINEMHFPLSKAANIVTNFV-GTIFIFALLG 102 >At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE) identical to chromatin remodeling factor CHD3 [Arabidopsis thaliana] GI:6478518 Length = 1384 Score = 27.9 bits (59), Expect = 6.4 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Frame = +1 Query: 241 GYKKIGPLTKLQIINA-LDNGQCKMEIAKKY 330 G K P+T +I+ A +DN Q ++EIA+ Y Sbjct: 1233 GLPKTDPITSEEIMGAAVDNNQARVEIAQHY 1263 >At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140 [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis thaliana] Length = 926 Score = 27.5 bits (58), Expect = 8.5 Identities = 14/46 (30%), Positives = 24/46 (52%) Frame = +3 Query: 492 YK*RAVAE*SNKSREGAGDTLIQKAKQLEDQLEYGTLMELHQIAAD 629 +K RAVA NK++E +TL++ D++ ++EL D Sbjct: 90 FKVRAVATVRNKNKEDFKETLVKHLDAFTDKIGRNVVLELMSTQVD 135 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,765,406 Number of Sequences: 28952 Number of extensions: 249646 Number of successful extensions: 622 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 603 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 622 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1403159472 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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