Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11f03
         (665 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g59740.1 68414.m06726 proton-dependent oligopeptide transport...    29   2.1  
At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL...    28   6.4  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    27   8.5  

>At1g59740.1 68414.m06726 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 591

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -1

Query: 323 FAISILH*PLSKAL-IICNFVKGPIFLYPFLG 231
           + I+ +H PLSKA  I+ NFV G IF++  LG
Sbjct: 72  YVINEMHFPLSKAANIVTNFV-GTIFIFALLG 102


>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE)
            identical to chromatin remodeling factor CHD3
            [Arabidopsis thaliana] GI:6478518
          Length = 1384

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 241  GYKKIGPLTKLQIINA-LDNGQCKMEIAKKY 330
            G  K  P+T  +I+ A +DN Q ++EIA+ Y
Sbjct: 1233 GLPKTDPITSEEIMGAAVDNNQARVEIAQHY 1263


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 492 YK*RAVAE*SNKSREGAGDTLIQKAKQLEDQLEYGTLMELHQIAAD 629
           +K RAVA   NK++E   +TL++      D++    ++EL     D
Sbjct: 90  FKVRAVATVRNKNKEDFKETLVKHLDAFTDKIGRNVVLELMSTQVD 135


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,765,406
Number of Sequences: 28952
Number of extensions: 249646
Number of successful extensions: 622
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)