Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11f02
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    56   3e-09
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    48   9e-07
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz...    46   4e-06
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    28   1.1  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    28   1.1  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   5.6  
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi...    25   7.4  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   9.8  

>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 56.4 bits (130), Expect = 3e-09
 Identities = 35/88 (39%), Positives = 45/88 (51%)
 Frame = +1

Query: 391 RVVVLIDMDCFYCQVEEKLNPELKGKPIAVVQYNPWKGGGIIAVNYVARDLGVTRHMRGD 570
           RVV  ID D FY QVE          P+AV Q   W+G  +IAVNY AR   ++RH    
Sbjct: 27  RVVAHIDQDAFYAQVESVRLGLDHSVPLAVQQ---WQG--LIAVNYAARAANISRHETVT 81

Query: 571 EAKEKCPNIQLPSVPCHRGKADISKYRD 654
           EAK+KCP +    V   +     +KY +
Sbjct: 82  EAKKKCPELCTAHVKTWKAGESEAKYHE 109


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 48.4 bits (110), Expect = 9e-07
 Identities = 24/71 (33%), Positives = 39/71 (54%)
 Frame = +1

Query: 391 RVVVLIDMDCFYCQVEEKLNPELKGKPIAVVQYNPWKGGGIIAVNYVARDLGVTRHMRGD 570
           R ++ +D DCF+  V  + + EL+ KP+AV   +  K   I + NY AR  G+   M   
Sbjct: 277 RFLLHVDFDCFFASVSTRFSHELRLKPVAVA--HGIKNSEIASCNYEARKFGIKNGMYVG 334

Query: 571 EAKEKCPNIQL 603
            AK  CP++++
Sbjct: 335 TAKNLCPSLRV 345


>SPCC553.07c |mug40||DinB translesion DNA repair
           polymerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 25/69 (36%), Positives = 38/69 (55%)
 Frame = +1

Query: 391 RVVVLIDMDCFYCQVEEKLNPELKGKPIAVVQYNPWKGGGIIAVNYVARDLGVTRHMRGD 570
           +++V +D D FY  +EE  NP+LK  P+AV +        +   NYVAR  GV   M   
Sbjct: 130 QIIVHVDCDAFYASIEELKNPKLKSLPMAVGK------SVLCTANYVARKFGVRSAMPEF 183

Query: 571 EAKEKCPNI 597
            A++ CP++
Sbjct: 184 IARKICPDL 192


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -2

Query: 169 HMNGIGGSREVQRLCFIFPHLYFQRY-*TVNKAPILHI 59
           HM G GG      L F+  HLY  RY  +++  P  H+
Sbjct: 489 HMMGQGGQFACLHLIFLQIHLYVHRYAASISSVPFSHV 526


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
 Frame = -1

Query: 218 YNYSIIIFKLIAAVQ*-SYEWNRRIPRSSAALFHFPTFV----LSKILN 87
           ++ S ++  L+  +Q  S+ +NRR+    A L +F TF+    LSKILN
Sbjct: 477 FSLSFVVAILLVPLQFISFRFNRRLSLLFAVLTYFSTFIFLCSLSKILN 525


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 169 HMNGIGGSREVQRLCF 122
           H+NG+   +E Q+LCF
Sbjct: 316 HINGVDDGKEFQKLCF 331


>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
           Sec14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 286

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = -3

Query: 570 ITSHVSCYSQIPR--NIVHCYYSSTFPRVILHHRNW-FS--FQFWVQFLFNLTIKTIHIN 406
           ITS  S YS I +  +I   YY     +  + +  W FS  F     FL   T+K IHI 
Sbjct: 179 ITSIHSVYSYIRQASSISQDYYPERMGKFYVINAPWGFSSAFNLIKGFLDEATVKKIHIL 238

Query: 405 QHNY 394
             NY
Sbjct: 239 GSNY 242


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 594 VRTFLFGLITSHVSCYSQIPRN 529
           + TFLFGL+ S ++ YS    N
Sbjct: 397 ISTFLFGLLASSIAKYSFFSNN 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,604,165
Number of Sequences: 5004
Number of extensions: 50120
Number of successful extensions: 105
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)