Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11f02
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0767 + 31823659-31823734,31823859-31823979,31824078-318241...   129   2e-30
06_03_1208 - 28422941-28423139,28423854-28424434,28424705-284250...    55   4e-08
03_05_0325 + 23135816-23135894,23136161-23136333,23136440-231366...    43   3e-04
07_03_0630 - 20097672-20097772,20097983-20102012                       31   1.1  
10_05_0046 + 8516043-8516425,8517908-8518019,8518276-8518377,851...    29   4.4  
03_01_0120 - 938064-938105,938204-938377,938494-938568,938657-93...    28   7.7  
01_05_0412 + 21929446-21929713,21931402-21931501,21931755-21931827     28   7.7  

>01_06_0767 +
           31823659-31823734,31823859-31823979,31824078-31824189,
           31824278-31824691,31824795-31824898,31825017-31825136,
           31825344-31825467,31826567-31826680,31826789-31826980,
           31827328-31827424,31827505-31827653,31828729-31829013
          Length = 635

 Score =  129 bits (312), Expect = 2e-30
 Identities = 58/90 (64%), Positives = 69/90 (76%)
 Frame = +1

Query: 391 RVVVLIDMDCFYCQVEEKLNPELKGKPIAVVQYNPWKGGGIIAVNYVARDLGVTRHMRGD 570
           RV+  +DMDCFY QVE++ NPEL+G+P AVVQYN WKGGG+IAV+Y AR  GV R MRGD
Sbjct: 12  RVIAHVDMDCFYVQVEQRRNPELRGQPTAVVQYNDWKGGGLIAVSYEARKFGVKRSMRGD 71

Query: 571 EAKEKCPNIQLPSVPCHRGKADISKYRDAG 660
           EAK  CP+I L  VP  R KAD++ YR AG
Sbjct: 72  EAKMVCPSINLVQVPVARDKADLNVYRSAG 101


>06_03_1208 -
           28422941-28423139,28423854-28424434,28424705-28425078,
           28425235-28425339,28425902-28425970,28426084-28426156,
           28426395-28426478,28426616-28426648,28426731-28426790,
           28427535-28427627,28427851-28427970,28428804-28428886,
           28428887-28429007,28429114-28429164,28429245-28429333,
           28429429-28429561,28430220-28430354,28430581-28430952,
           28431679-28431796,28431883-28431998,28432131-28432442
          Length = 1106

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
 Frame = +1

Query: 397 VVLIDMDCFYCQVEEKLNPELKGKPIAVVQY-NPWKGGGIIAVNYVARDLGVTRHMRGDE 573
           ++ IDMDCF+  V  +  PEL  KP+AV    NP     I + NY AR+ G+   M   E
Sbjct: 346 IIHIDMDCFFVSVVIRNKPELHDKPVAVCHSDNPKGTAEISSANYPARNYGIKAGMFVRE 405

Query: 574 AKEKCPNIQL 603
           AK +CP++ +
Sbjct: 406 AKARCPHLMI 415


>03_05_0325 +
           23135816-23135894,23136161-23136333,23136440-23136613,
           23136881-23137004,23137090-23137190,23137337-23137423,
           23137801-23137896,23138209-23138329,23138475-23138603,
           23139458-23139549,23139660-23139771,23140189-23140541,
           23140670-23140899,23141179-23141278,23143357-23143411,
           23143548-23145496,23145587-23145745,23146514-23146685,
           23146758-23147056,23147246-23147521
          Length = 1626

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 26/63 (41%), Positives = 31/63 (49%)
 Frame = +1

Query: 409 DMDCFYCQVEEKLNPELKGKPIAVVQYNPWKGGGIIAVNYVARDLGVTRHMRGDEAKEKC 588
           DMD FY  VE   NP LKGKP+AV   +      I   +Y AR  GV   M G    + C
Sbjct: 107 DMDAFYATVEILENPSLKGKPLAVGSMSM-----IATASYEARKFGVRAAMPGFIGCKLC 161

Query: 589 PNI 597
           P +
Sbjct: 162 PEL 164


>07_03_0630 - 20097672-20097772,20097983-20102012
          Length = 1376

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 585 FLFGLITSHVSCYSQIPRNIVHCY-YSSTFPRVILHHRNWFSFQFWV 448
           F   +I+S  SCYS +P  +  C+ Y S FPR  +  ++    Q W+
Sbjct: 474 FAIRIISSLGSCYSALPGYLRQCFVYCSIFPRNYVFEKDKL-VQMWI 519


>10_05_0046 +
           8516043-8516425,8517908-8518019,8518276-8518377,
           8518605-8518657,8518976-8519062,8519162-8519830,
           8520154-8520214,8520295-8520342
          Length = 504

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 484 QYNPWKGGGIIAVNYVARDLGVTRHMRGDEAK-EKCPN 594
           Q  P +G G      VA D+G T    GD+ K E CPN
Sbjct: 400 QNKPTQGQGECGALVVAEDVGSTEGETGDKKKTEGCPN 437


>03_01_0120 -
           938064-938105,938204-938377,938494-938568,938657-938737,
           939035-939109,939230-939421
          Length = 212

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 588 TFLFGLITSHVSCYSQIP 535
           T  FG +TS +SCY Q+P
Sbjct: 185 TGAFGFVTSLISCYQQLP 202


>01_05_0412 + 21929446-21929713,21931402-21931501,21931755-21931827
          Length = 146

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 605 GS*MLGHFSLASSPLMCLVTPKSLAT*FTAIIPPP 501
           GS +LG    + SPL   + P SL +    ++PPP
Sbjct: 11  GSSLLGRLLASPSPLRAGLPPPSLLSRIQPLVPPP 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,737,054
Number of Sequences: 37544
Number of extensions: 289586
Number of successful extensions: 456
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)