Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11f02
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3195| Best HMM Match : No HMM Matches (HMM E-Value=.)              142   3e-34
SB_46308| Best HMM Match : IMS (HMM E-Value=0)                         50   2e-06
SB_17357| Best HMM Match : IMS (HMM E-Value=0)                         41   8e-04
SB_41938| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.004
SB_15048| Best HMM Match : IMS (HMM E-Value=0)                         33   0.21 
SB_30998| Best HMM Match : Transposase_21 (HMM E-Value=0.00024)        29   3.4  

>SB_3195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 650

 Score =  142 bits (343), Expect = 3e-34
 Identities = 64/90 (71%), Positives = 75/90 (83%)
 Frame = +1

Query: 391 RVVVLIDMDCFYCQVEEKLNPELKGKPIAVVQYNPWKGGGIIAVNYVARDLGVTRHMRGD 570
           RV+ L+DMDCFY QVE++  PELKGKP AVVQYN WKGGGIIAV+Y AR  GVTR+MRGD
Sbjct: 6   RVIALVDMDCFYVQVEQRRCPELKGKPCAVVQYNAWKGGGIIAVSYEARACGVTRNMRGD 65

Query: 571 EAKEKCPNIQLPSVPCHRGKADISKYRDAG 660
           EAK+KCP+I L  VP  RGKA+++ YRDAG
Sbjct: 66  EAKQKCPDIALVQVPVLRGKANLAHYRDAG 95


>SB_46308| Best HMM Match : IMS (HMM E-Value=0)
          Length = 1245

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 32/80 (40%), Positives = 43/80 (53%)
 Frame = +1

Query: 391 RVVVLIDMDCFYCQVEEKLNPELKGKPIAVVQYNPWKGGGIIAVNYVARDLGVTRHMRGD 570
           R +V +DMD FY  VE + +P LK KP+AV   +      +   NY AR  GV   M G 
Sbjct: 652 RTIVHVDMDAFYAAVEMRDDPSLKDKPMAVGSTSM-----LSTSNYPARRYGVRAAMPGF 706

Query: 571 EAKEKCPNIQLPSVPCHRGK 630
            AK+ CP++ +  VP H  K
Sbjct: 707 IAKKLCPHLII--VPLHFDK 724


>SB_17357| Best HMM Match : IMS (HMM E-Value=0)
          Length = 990

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 20/89 (22%)
 Frame = +1

Query: 391 RVVVLIDMDCFYCQVEEKLNPELKGKPIAVVQ-------------YNPWKGGG------- 510
           RV++ IDMDCF+  V  + +PEL GKP+AV                +P K          
Sbjct: 215 RVIMHIDMDCFFVSVYVRDHPELDGKPVAVCHAGKSGDQVTTSKVTSPDKSSAFFNSMSE 274

Query: 511 IIAVNYVARDLGVTRHMRGDEAKEKCPNI 597
           I + +Y AR+ GV   M   +A++ CP+I
Sbjct: 275 IASCSYAARECGVRNGMFLGQARKLCPDI 303


>SB_41938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
 Frame = +1

Query: 427 CQVEEKL-NPELKGKPIAVVQYNPWKGGGIIAVNYVARDLGVTRHMRGDEAKEKCPNIQL 603
           C++ E + NP L+ +P+ V Q +      ++  NYVAR +G+ + +   EAK+KCP++ +
Sbjct: 268 CEMVEMIRNPCLRDRPVGVSQKHI-----LVTCNYVARAMGLKKLISLAEAKKKCPDLVI 322

Query: 604 PSVPCHRGKADISKYRD 654
            +     G+ D++KYR+
Sbjct: 323 IN-----GE-DLTKYRE 333


>SB_15048| Best HMM Match : IMS (HMM E-Value=0)
          Length = 660

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +1

Query: 403 LIDMDCFYCQVEEKLNPELKGKPIAVVQYNPWKGGGIIAVNYVARDLGV 549
           LID + FY   E    P+  GKPI V+  N    G II+ +  A+ LG+
Sbjct: 4   LIDCNNFYASCERVFQPQYNGKPIVVLSNN---DGCIISRSDEAKKLGI 49


>SB_30998| Best HMM Match : Transposase_21 (HMM E-Value=0.00024)
          Length = 587

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 139 VQRLCFIFPHLYFQRY*TVNKAPILHILIRRNIIWTNY 26
           +Q  C  F  LY +RY T+N   +LH++   N+I T Y
Sbjct: 525 LQSFCSNFSRLYEERYMTLNLHQLLHLV--DNVIPTKY 560


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,740,100
Number of Sequences: 59808
Number of extensions: 345836
Number of successful extensions: 630
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)