Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11f02
         (665 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058771-1|AAL14000.1|  885|Drosophila melanogaster SD05329p pro...   149   3e-36
AE014296-3638|AAF51794.1|  885|Drosophila melanogaster CG7143-PA...   149   3e-36
AB049433-1|BAB15799.1|  885|Drosophila melanogaster dpol-eta pro...   149   3e-36
AB036766-1|BAB20905.1|  885|Drosophila melanogaster DNA polymera...   149   3e-36
AY051762-1|AAK93186.1|  737|Drosophila melanogaster LD29090p pro...    54   1e-07
AE014297-705|AAN14307.1|  737|Drosophila melanogaster CG7602-PB,...    54   1e-07
AE014297-704|AAF54198.1|  737|Drosophila melanogaster CG7602-PA,...    54   1e-07
AB049434-1|BAB15800.1|  737|Drosophila melanogaster dpol-iota pr...    54   1e-07
AE014296-120|AAF47401.1|  995|Drosophila melanogaster CG12189-PA...    38   0.009
AB049435-1|BAB15801.1|  995|Drosophila melanogaster dREV1 protein.     38   0.009

>AY058771-1|AAL14000.1|  885|Drosophila melanogaster SD05329p
           protein.
          Length = 885

 Score =  149 bits (361), Expect = 3e-36
 Identities = 67/91 (73%), Positives = 76/91 (83%)
 Frame = +1

Query: 391 RVVVLIDMDCFYCQVEEKLNPELKGKPIAVVQYNPWKGGGIIAVNYVARDLGVTRHMRGD 570
           RVV+L+DMDCF+CQVEEK +PE + +P+AVVQYNPW+GGGIIAVNY AR  GVTRHMRGD
Sbjct: 16  RVVLLVDMDCFFCQVEEKQHPEYRNRPLAVVQYNPWRGGGIIAVNYAARAKGVTRHMRGD 75

Query: 571 EAKEKCPNIQLPSVPCHRGKADISKYRDAGK 663
           EAK+ CP I L  VP  R KAD SKYRDAGK
Sbjct: 76  EAKDLCPEIVLCQVPNIREKADTSKYRDAGK 106


>AE014296-3638|AAF51794.1|  885|Drosophila melanogaster CG7143-PA
           protein.
          Length = 885

 Score =  149 bits (361), Expect = 3e-36
 Identities = 67/91 (73%), Positives = 76/91 (83%)
 Frame = +1

Query: 391 RVVVLIDMDCFYCQVEEKLNPELKGKPIAVVQYNPWKGGGIIAVNYVARDLGVTRHMRGD 570
           RVV+L+DMDCF+CQVEEK +PE + +P+AVVQYNPW+GGGIIAVNY AR  GVTRHMRGD
Sbjct: 16  RVVLLVDMDCFFCQVEEKQHPEYRNRPLAVVQYNPWRGGGIIAVNYAARAKGVTRHMRGD 75

Query: 571 EAKEKCPNIQLPSVPCHRGKADISKYRDAGK 663
           EAK+ CP I L  VP  R KAD SKYRDAGK
Sbjct: 76  EAKDLCPEIVLCQVPNIREKADTSKYRDAGK 106


>AB049433-1|BAB15799.1|  885|Drosophila melanogaster dpol-eta
           protein.
          Length = 885

 Score =  149 bits (361), Expect = 3e-36
 Identities = 67/91 (73%), Positives = 76/91 (83%)
 Frame = +1

Query: 391 RVVVLIDMDCFYCQVEEKLNPELKGKPIAVVQYNPWKGGGIIAVNYVARDLGVTRHMRGD 570
           RVV+L+DMDCF+CQVEEK +PE + +P+AVVQYNPW+GGGIIAVNY AR  GVTRHMRGD
Sbjct: 16  RVVLLVDMDCFFCQVEEKQHPEYRNRPLAVVQYNPWRGGGIIAVNYAARAKGVTRHMRGD 75

Query: 571 EAKEKCPNIQLPSVPCHRGKADISKYRDAGK 663
           EAK+ CP I L  VP  R KAD SKYRDAGK
Sbjct: 76  EAKDLCPEIVLCQVPNIREKADTSKYRDAGK 106


>AB036766-1|BAB20905.1|  885|Drosophila melanogaster DNA polymerase
           eta protein.
          Length = 885

 Score =  149 bits (361), Expect = 3e-36
 Identities = 67/91 (73%), Positives = 76/91 (83%)
 Frame = +1

Query: 391 RVVVLIDMDCFYCQVEEKLNPELKGKPIAVVQYNPWKGGGIIAVNYVARDLGVTRHMRGD 570
           RVV+L+DMDCF+CQVEEK +PE + +P+AVVQYNPW+GGGIIAVNY AR  GVTRHMRGD
Sbjct: 16  RVVLLVDMDCFFCQVEEKQHPEYRNRPLAVVQYNPWRGGGIIAVNYAARAKGVTRHMRGD 75

Query: 571 EAKEKCPNIQLPSVPCHRGKADISKYRDAGK 663
           EAK+ CP I L  VP  R KAD SKYRDAGK
Sbjct: 76  EAKDLCPEIVLCQVPNIREKADTSKYRDAGK 106


>AY051762-1|AAK93186.1|  737|Drosophila melanogaster LD29090p
           protein.
          Length = 737

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 29/71 (40%), Positives = 42/71 (59%)
 Frame = +1

Query: 391 RVVVLIDMDCFYCQVEEKLNPELKGKPIAVVQYNPWKGGGIIAVNYVARDLGVTRHMRGD 570
           R ++ +DMD FY QVEE  +P L+ K + + Q N      ++  NYVAR  GVT+ M   
Sbjct: 15  RTIIHLDMDYFYAQVEEIRDPTLRSKALGIQQKNI-----VVTCNYVARAKGVTKLMLIA 69

Query: 571 EAKEKCPNIQL 603
           EA+  CP++ L
Sbjct: 70  EAQRICPDLVL 80


>AE014297-705|AAN14307.1|  737|Drosophila melanogaster CG7602-PB,
           isoform B protein.
          Length = 737

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 29/71 (40%), Positives = 42/71 (59%)
 Frame = +1

Query: 391 RVVVLIDMDCFYCQVEEKLNPELKGKPIAVVQYNPWKGGGIIAVNYVARDLGVTRHMRGD 570
           R ++ +DMD FY QVEE  +P L+ K + + Q N      ++  NYVAR  GVT+ M   
Sbjct: 15  RTIIHLDMDYFYAQVEEIRDPTLRSKALGIQQKNI-----VVTCNYVARAKGVTKLMLIA 69

Query: 571 EAKEKCPNIQL 603
           EA+  CP++ L
Sbjct: 70  EAQRICPDLVL 80


>AE014297-704|AAF54198.1|  737|Drosophila melanogaster CG7602-PA,
           isoform A protein.
          Length = 737

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 29/71 (40%), Positives = 42/71 (59%)
 Frame = +1

Query: 391 RVVVLIDMDCFYCQVEEKLNPELKGKPIAVVQYNPWKGGGIIAVNYVARDLGVTRHMRGD 570
           R ++ +DMD FY QVEE  +P L+ K + + Q N      ++  NYVAR  GVT+ M   
Sbjct: 15  RTIIHLDMDYFYAQVEEIRDPTLRSKALGIQQKNI-----VVTCNYVARAKGVTKLMLIA 69

Query: 571 EAKEKCPNIQL 603
           EA+  CP++ L
Sbjct: 70  EAQRICPDLVL 80


>AB049434-1|BAB15800.1|  737|Drosophila melanogaster dpol-iota
           protein.
          Length = 737

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 29/71 (40%), Positives = 42/71 (59%)
 Frame = +1

Query: 391 RVVVLIDMDCFYCQVEEKLNPELKGKPIAVVQYNPWKGGGIIAVNYVARDLGVTRHMRGD 570
           R ++ +DMD FY QVEE  +P L+ K + + Q N      ++  NYVAR  GVT+ M   
Sbjct: 15  RTIIHLDMDYFYAQVEEIRDPTLRSKALGIQQKNI-----VVTCNYVARAKGVTKLMLIA 69

Query: 571 EAKEKCPNIQL 603
           EA+  CP++ L
Sbjct: 70  EAQRICPDLVL 80


>AE014296-120|AAF47401.1|  995|Drosophila melanogaster CG12189-PA
           protein.
          Length = 995

 Score = 38.3 bits (85), Expect = 0.009
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = +1

Query: 391 RVVVLIDMDCFYCQVEEKLNPELKGKPIAV 480
           R V+ IDMDCF+  V  +  PEL+G PIAV
Sbjct: 273 RYVMHIDMDCFFVSVGLRTRPELRGLPIAV 302


>AB049435-1|BAB15801.1|  995|Drosophila melanogaster dREV1 protein.
          Length = 995

 Score = 38.3 bits (85), Expect = 0.009
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = +1

Query: 391 RVVVLIDMDCFYCQVEEKLNPELKGKPIAV 480
           R V+ IDMDCF+  V  +  PEL+G PIAV
Sbjct: 273 RYVMHIDMDCFFVSVGLRTRPELRGLPIAV 302


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,194,015
Number of Sequences: 53049
Number of extensions: 509979
Number of successful extensions: 714
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2868730650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)