BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov11f02 (665 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF025460-5|AAB70988.5| 584|Caenorhabditis elegans Polh (dna pol... 94 7e-20 AB244413-1|BAE72703.1| 584|Caenorhabditis elegans DNA polymeras... 94 7e-20 Z46812-2|CAA86844.1| 1027|Caenorhabditis elegans Hypothetical pr... 41 0.001 L12018-1|AAA65458.1| 518|Caenorhabditis elegans Polk (dna polym... 40 0.002 Z81131-3|CAB03424.1| 438|Caenorhabditis elegans Hypothetical pr... 29 3.9 >AF025460-5|AAB70988.5| 584|Caenorhabditis elegans Polh (dna polymerase eta) homologprotein 1 protein. Length = 584 Score = 94.3 bits (224), Expect = 7e-20 Identities = 51/92 (55%), Positives = 62/92 (67%), Gaps = 3/92 (3%) Frame = +1 Query: 391 RVVVLIDMDCFYCQVEEKLNPELKGKPIAVVQYN-PWKGGGIIAVNYVARDLGVTRHMRG 567 RV+ LIDMDCFY QVE++ NP L G+P+ VVQ++ GGI+AV+Y AR GV R M Sbjct: 3 RVISLIDMDCFYAQVEQRDNPSLWGQPVIVVQHSRQGIEGGILAVSYEARPFGVKRGMTV 62 Query: 568 DEAKEKCPNIQLPSVPC--HRGKADISKYRDA 657 EAK KCP I + VP + KADI KYRDA Sbjct: 63 AEAKLKCPQISICHVPIGEYVDKADIQKYRDA 94 >AB244413-1|BAE72703.1| 584|Caenorhabditis elegans DNA polymerase eta protein. Length = 584 Score = 94.3 bits (224), Expect = 7e-20 Identities = 51/92 (55%), Positives = 62/92 (67%), Gaps = 3/92 (3%) Frame = +1 Query: 391 RVVVLIDMDCFYCQVEEKLNPELKGKPIAVVQYN-PWKGGGIIAVNYVARDLGVTRHMRG 567 RV+ LIDMDCFY QVE++ NP L G+P+ VVQ++ GGI+AV+Y AR GV R M Sbjct: 3 RVISLIDMDCFYAQVEQRDNPSLWGQPVIVVQHSRQGIEGGILAVSYEARPFGVKRGMTV 62 Query: 568 DEAKEKCPNIQLPSVPC--HRGKADISKYRDA 657 EAK KCP I + VP + KADI KYRDA Sbjct: 63 AEAKLKCPQISICHVPIGEYVDKADIQKYRDA 94 >Z46812-2|CAA86844.1| 1027|Caenorhabditis elegans Hypothetical protein ZK675.2 protein. Length = 1027 Score = 40.7 bits (91), Expect = 0.001 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%) Frame = +1 Query: 406 IDMDCFYCQVEEKLNPELKGKPIAVVQYNPWKGGGIIAV---NYVARDLGVTRHMRGDEA 576 +D+DCF+ V + +LK K +A+ + V +Y ARD GV M +A Sbjct: 443 VDLDCFFVSVAVRNRIDLKHKEVAITHSKGTISNSMSEVASCSYAARDCGVKNGMLVRDA 502 Query: 577 KEKCPNIQL 603 +KCP + L Sbjct: 503 LQKCPQLTL 511 >L12018-1|AAA65458.1| 518|Caenorhabditis elegans Polk (dna polymerase kappa) homologprotein 1 protein. Length = 518 Score = 39.9 bits (89), Expect = 0.002 Identities = 24/71 (33%), Positives = 36/71 (50%) Frame = +1 Query: 391 RVVVLIDMDCFYCQVEEKLNPELKGKPIAVVQYNPWKGGGIIAVNYVARDLGVTRHMRGD 570 R V IDMD ++ VE + NP L+ P+AV + NY+AR GV M G Sbjct: 83 RDCVCIDMDAYFAAVEMRDNPALRTVPMAV-----GSSAMLSTSNYLARRFGVRAGMPGF 137 Query: 571 EAKEKCPNIQL 603 + + CP++ + Sbjct: 138 ISNKLCPSLTI 148 >Z81131-3|CAB03424.1| 438|Caenorhabditis elegans Hypothetical protein T24D1.4 protein. Length = 438 Score = 28.7 bits (61), Expect = 3.9 Identities = 13/33 (39%), Positives = 21/33 (63%) Frame = -3 Query: 516 YYSSTFPRVILHHRNWFSFQFWVQFLFNLTIKT 418 YYS P ++ +R+ F+F W +FL N T++T Sbjct: 306 YYSYDHPYLLADNRH-FTFYIWRRFLANPTMRT 337 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,272,104 Number of Sequences: 27780 Number of extensions: 275685 Number of successful extensions: 526 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 505 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 520 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1497472076 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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