Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11f02
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025460-5|AAB70988.5|  584|Caenorhabditis elegans Polh (dna pol...    94   7e-20
AB244413-1|BAE72703.1|  584|Caenorhabditis elegans DNA polymeras...    94   7e-20
Z46812-2|CAA86844.1| 1027|Caenorhabditis elegans Hypothetical pr...    41   0.001
L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna polym...    40   0.002
Z81131-3|CAB03424.1|  438|Caenorhabditis elegans Hypothetical pr...    29   3.9  

>AF025460-5|AAB70988.5|  584|Caenorhabditis elegans Polh (dna
           polymerase eta) homologprotein 1 protein.
          Length = 584

 Score = 94.3 bits (224), Expect = 7e-20
 Identities = 51/92 (55%), Positives = 62/92 (67%), Gaps = 3/92 (3%)
 Frame = +1

Query: 391 RVVVLIDMDCFYCQVEEKLNPELKGKPIAVVQYN-PWKGGGIIAVNYVARDLGVTRHMRG 567
           RV+ LIDMDCFY QVE++ NP L G+P+ VVQ++     GGI+AV+Y AR  GV R M  
Sbjct: 3   RVISLIDMDCFYAQVEQRDNPSLWGQPVIVVQHSRQGIEGGILAVSYEARPFGVKRGMTV 62

Query: 568 DEAKEKCPNIQLPSVPC--HRGKADISKYRDA 657
            EAK KCP I +  VP   +  KADI KYRDA
Sbjct: 63  AEAKLKCPQISICHVPIGEYVDKADIQKYRDA 94


>AB244413-1|BAE72703.1|  584|Caenorhabditis elegans DNA polymerase
           eta protein.
          Length = 584

 Score = 94.3 bits (224), Expect = 7e-20
 Identities = 51/92 (55%), Positives = 62/92 (67%), Gaps = 3/92 (3%)
 Frame = +1

Query: 391 RVVVLIDMDCFYCQVEEKLNPELKGKPIAVVQYN-PWKGGGIIAVNYVARDLGVTRHMRG 567
           RV+ LIDMDCFY QVE++ NP L G+P+ VVQ++     GGI+AV+Y AR  GV R M  
Sbjct: 3   RVISLIDMDCFYAQVEQRDNPSLWGQPVIVVQHSRQGIEGGILAVSYEARPFGVKRGMTV 62

Query: 568 DEAKEKCPNIQLPSVPC--HRGKADISKYRDA 657
            EAK KCP I +  VP   +  KADI KYRDA
Sbjct: 63  AEAKLKCPQISICHVPIGEYVDKADIQKYRDA 94


>Z46812-2|CAA86844.1| 1027|Caenorhabditis elegans Hypothetical
           protein ZK675.2 protein.
          Length = 1027

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = +1

Query: 406 IDMDCFYCQVEEKLNPELKGKPIAVVQYNPWKGGGIIAV---NYVARDLGVTRHMRGDEA 576
           +D+DCF+  V  +   +LK K +A+          +  V   +Y ARD GV   M   +A
Sbjct: 443 VDLDCFFVSVAVRNRIDLKHKEVAITHSKGTISNSMSEVASCSYAARDCGVKNGMLVRDA 502

Query: 577 KEKCPNIQL 603
            +KCP + L
Sbjct: 503 LQKCPQLTL 511


>L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna
           polymerase kappa) homologprotein 1 protein.
          Length = 518

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 24/71 (33%), Positives = 36/71 (50%)
 Frame = +1

Query: 391 RVVVLIDMDCFYCQVEEKLNPELKGKPIAVVQYNPWKGGGIIAVNYVARDLGVTRHMRGD 570
           R  V IDMD ++  VE + NP L+  P+AV          +   NY+AR  GV   M G 
Sbjct: 83  RDCVCIDMDAYFAAVEMRDNPALRTVPMAV-----GSSAMLSTSNYLARRFGVRAGMPGF 137

Query: 571 EAKEKCPNIQL 603
            + + CP++ +
Sbjct: 138 ISNKLCPSLTI 148


>Z81131-3|CAB03424.1|  438|Caenorhabditis elegans Hypothetical
           protein T24D1.4 protein.
          Length = 438

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 516 YYSSTFPRVILHHRNWFSFQFWVQFLFNLTIKT 418
           YYS   P ++  +R+ F+F  W +FL N T++T
Sbjct: 306 YYSYDHPYLLADNRH-FTFYIWRRFLANPTMRT 337


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,272,104
Number of Sequences: 27780
Number of extensions: 275685
Number of successful extensions: 526
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)