Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11f02
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.86 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   3.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   4.6  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    21   8.0  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    21   8.0  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   8.0  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    21   8.0  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   8.0  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 448 NPELKGKPIAVVQYNPWK 501
           NP LK KP  VVQ   WK
Sbjct: 370 NPILKAKPSEVVQILGWK 387


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 305 FYKYFSTILLETVLRPYILL*FYKTK*ILYNYSIIIFKLIAAV 177
           F+K   ++  +T+  P   L  YK K ILY   + + KL  A+
Sbjct: 124 FFKNAKSVTFQTMTIPNHYLWLYKDKTILYMVKLTL-KLSCAM 165


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/48 (22%), Positives = 20/48 (41%)
 Frame = +1

Query: 445 LNPELKGKPIAVVQYNPWKGGGIIAVNYVARDLGVTRHMRGDEAKEKC 588
           +N   + K    ++   +KG  ++ V+ V +D     H      KE C
Sbjct: 75  VNSTSENKTFPTIKIVGYKGRALVVVSCVTKDQPYRPHPHNLVGKEAC 122


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/48 (22%), Positives = 20/48 (41%)
 Frame = +1

Query: 445 LNPELKGKPIAVVQYNPWKGGGIIAVNYVARDLGVTRHMRGDEAKEKC 588
           +N   + K    ++   +KG  ++ V+ V +D     H      KE C
Sbjct: 75  VNSTSENKTFPTIKIVGYKGRALVVVSCVTKDQPYRPHPHNLVGKEAC 122


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = -3

Query: 570 ITSHVSCYSQIPRNIVHCYYSSTFPRVILHHRNWFSFQFWV 448
           I   +S   ++ RNI +  + +  P +++   +W S  FW+
Sbjct: 227 IYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVS--FWI 265


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 447 QFLFNLTIKTIHINQHNY 394
           + + +L+ KTIH N +NY
Sbjct: 80  KIISSLSNKTIHNNNNNY 97


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 447 QFLFNLTIKTIHINQHNY 394
           + + +L+ KTIH N +NY
Sbjct: 80  KIISSLSNKTIHNNNNNY 97


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 447 QFLFNLTIKTIHINQHNY 394
           + + +L+ KTIH N +NY
Sbjct: 80  KIISSLSNKTIHNNNNNY 97


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 447 QFLFNLTIKTIHINQHNY 394
           + + +L+ KTIH N +NY
Sbjct: 80  KIISSLSNKTIHNNNNNY 97


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 447 QFLFNLTIKTIHINQHNY 394
           + + +L+ KTIH N +NY
Sbjct: 313 KIISSLSNKTIHNNNNNY 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,036
Number of Sequences: 438
Number of extensions: 3834
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)