Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11f02
         (665 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44740.2 68418.m05484 UMUC-like DNA repair family protein low...   128   2e-30
At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low...    48   6e-06
At5g44750.1 68418.m05485 UMUC-like DNA repair family protein / B...    47   1e-05
At2g32660.1 68415.m03992 disease resistance family protein / LRR...    28   4.9  

>At5g44740.2 68418.m05484 UMUC-like DNA repair family protein low
           similarity to DNA polymerase eta [Homo sapiens]
           GI:11463971; contains Pfam profile PF00817:
           ImpB/MucB/SamB family
          Length = 672

 Score =  128 bits (310), Expect = 2e-30
 Identities = 58/90 (64%), Positives = 68/90 (75%)
 Frame = +1

Query: 391 RVVVLIDMDCFYCQVEEKLNPELKGKPIAVVQYNPWKGGGIIAVNYVARDLGVTRHMRGD 570
           RV+  +DMDCFY QVE++  PEL+G P AVVQYN W+GGG+IAV+Y AR  GV R MRGD
Sbjct: 12  RVIAHVDMDCFYVQVEQRKQPELRGLPSAVVQYNEWQGGGLIAVSYEARKCGVKRSMRGD 71

Query: 571 EAKEKCPNIQLPSVPCHRGKADISKYRDAG 660
           EAK  CP IQL  VP  RGKAD++ YR AG
Sbjct: 72  EAKAACPQIQLVQVPVARGKADLNLYRSAG 101


>At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low
           similarity to DNA polymerase kappa [Mus musculus]
           GI:14279087; contains Pfam profile PF00817:
           ImpB/MucB/SamB family
          Length = 785

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 27/69 (39%), Positives = 38/69 (55%)
 Frame = +1

Query: 391 RVVVLIDMDCFYCQVEEKLNPELKGKPIAVVQYNPWKGGGIIAVNYVARDLGVTRHMRGD 570
           R+ + +DMD FY  VE   +P +KGKP+AV   +      I   NY AR  GV   M G 
Sbjct: 103 RIWLHVDMDAFYAAVETLSDPSIKGKPMAVGGLSM-----ISTANYEARKFGVRAAMPGF 157

Query: 571 EAKEKCPNI 597
            A++ CP++
Sbjct: 158 IARKLCPDL 166


>At5g44750.1 68418.m05485 UMUC-like DNA repair family protein / BRCT
           domain-containing protein low similarity to Rev1S [Homo
           sapiens] GI:12483635; contains Pfam profiles PF00817:
           ImpB/MucB/SamB family, PF00533: BRCA1 C Terminus (BRCT)
           domain
          Length = 1102

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 31/74 (41%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = +1

Query: 397 VVLIDMDCFYCQVEEKLNPELKGKPIAVVQY-NPWKGGGIIAVNYVARDLGVTRHMRGDE 573
           ++ ID+DCF+  V  K   EL  KP+AV    NP     I + NY AR  GV   M    
Sbjct: 375 IIHIDLDCFFVSVVIKNRLELHDKPVAVCHSDNPKGTAEISSANYPARAYGVKAGMFVRH 434

Query: 574 AKEKCPNIQLPSVP 615
           AK+ CP  QL  VP
Sbjct: 435 AKDLCP--QLVIVP 446


>At2g32660.1 68415.m03992 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-4
           [Lycopersicon hirsutum] gi|2808683|emb|CAA05268
          Length = 589

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = -3

Query: 543 QIPRNIVHCYYSSTFPRVILHHRNWFSFQFWVQFLFNLTIKTIHINQHNYP 391
           ++PR++++C +       + H+R   SF  W++ L NL + T+  N  + P
Sbjct: 277 ELPRSLLNCSFIRFLS--VDHNRINDSFPLWLKALPNLKVLTLRSNSFHGP 325


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,208,033
Number of Sequences: 28952
Number of extensions: 249384
Number of successful extensions: 414
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)