Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11e23
         (241 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    26   0.58 
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch...    25   1.3  
SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo...    25   1.8  
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...    24   2.3  
SPCC1020.07 |||haloacid dehalogenase-like hydrolase|Schizosaccha...    23   4.1  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    23   4.1  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    23   5.4  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    23   5.4  
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    23   5.4  
SPAC1002.06c |bqt2|mug18, rec23|bouquet formation protein Bqt2|S...    23   5.4  
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    23   7.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    23   7.1  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    23   7.1  
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    22   9.4  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    22   9.4  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    22   9.4  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    22   9.4  
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           22   9.4  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    22   9.4  

>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 26.2 bits (55), Expect = 0.58
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = -1

Query: 100 FTQAAPNAPRPPYTTILPVAITTSS---LVHN 14
           F +  P+A R PY   LP  +T S+   +VHN
Sbjct: 248 FARTVPDASRHPYPDRLPTPLTPSNAHWVVHN 279


>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 135 IDLNPNEKADFNITVP-KDASWVEQEDHVVNEL 230
           + L PN    FNI +P + A+ ++Q + V+  L
Sbjct: 76  VSLTPNPVISFNIKIPSRTANAIQQSNRVIVHL 108


>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
           Agn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 69  GRGALGAACVNHFKSFNYW-VANIDLNPNE 155
           G+GAL  +  + F S+N W   + D+N N+
Sbjct: 168 GQGALEESVADGFLSWNAWPTTDADMNDND 197


>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 74  TTTVHDDSTGSHYNVFSRSQL 12
           T  V D + G+H NVFSR+ L
Sbjct: 159 TIYVSDPTWGNHKNVFSRAGL 179


>SPCC1020.07 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 236

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 52  LPVAITTSSLVHNFK 8
           +P+A+ TSS  HNF+
Sbjct: 103 IPIALATSSDTHNFE 117


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 51  RIVVYGGRGALGAACVNHFKSFNYWVANIDLNPN 152
           ++ +Y  R     A ++H   FNY + N  L+PN
Sbjct: 477 KLAMYQNRCNNLEAMLSHQNGFNYNINNDGLSPN 510


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = -1

Query: 166 KSAFSLGFKSMLATQ*LKDLKWFTQAAPNAPRPPYTTILPVAITTSSLVHN 14
           +SA SLG ++      L  +++ TQ   ++  PP + ++     +SS++HN
Sbjct: 254 RSASSLGHRTNNNQNQL--IRFSTQIRSSSTSPPRSPLIISDSPSSSIIHN 302


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 30  DVVMATGRIVVYGGRGALGAACVNHFKSFNYW 125
           +V+    R+    G+  L     NH  SFN+W
Sbjct: 264 NVLEIADRLCCALGQDVLDCLFSNHILSFNFW 295


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 207 PVQPMKRLWG 178
           PV P KRLWG
Sbjct: 48  PVPPSKRLWG 57


>SPAC1002.06c |bqt2|mug18, rec23|bouquet formation protein
           Bqt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 118

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 84  PMPHDHRTRRFYR*PLQRLLSF 19
           P+  DHR R  Y  PL   LSF
Sbjct: 91  PLYVDHRIRSVYLQPLPSTLSF 112


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 240 GRFQARSRHDLPVQPMKRLWGQ 175
           G +Q      LP++ + R+WGQ
Sbjct: 72  GSWQVYLLSSLPLRSLSRVWGQ 93


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 98   HAGSTQCPTTTVHDDSTGSHYNVFSRS 18
            HA S+   T+  H DS  S +   SRS
Sbjct: 1315 HADSSSTRTSLAHQDSRKSLHRHLSRS 1341


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1325

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 135  IDLNPNEKADFNITVPKDASWVEQED 212
            +D+ P EK D N   PK    V+  D
Sbjct: 959  LDVVPKEKRDLNSFFPKQPLVVQSTD 984


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 99  SRRQHPMPHDHRTRRF 52
           +R+ +P PH  R +RF
Sbjct: 84  ARKSNPNPHKRRIKRF 99


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 147 PNEKADFNITVPKDASWVEQEDHVVNEL 230
           PNE  D      KD   VE+E  V  ++
Sbjct: 852 PNEVDDAEAADEKDGKLVEEEQRVTGDV 879


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 82  NAPRPPYTTILPVAITTSSLVHNFKLT 2
           N P P  TTI P +   S+   N+  T
Sbjct: 49  NGPVPGTTTIYPTSNVASNTSENYPYT 75


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 153 EKADFNITVPKDASWVEQEDHVVN 224
           +K   N T+P++   VE+ED + +
Sbjct: 306 DKFKNNPTIPQELDLVEEEDQITH 329


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 225 RSRHDLPVQPMKRLW 181
           R RH  P+QP K  W
Sbjct: 354 RVRHQQPLQPAKVTW 368


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = -3

Query: 137 NVSDPIIKRFKMVHAGSTQCPTTTVH 60
           N+S P++++    H+ ST+    ++H
Sbjct: 363 NLSIPVLQKPSNFHSSSTELSDNSIH 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 973,341
Number of Sequences: 5004
Number of extensions: 15790
Number of successful extensions: 57
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)