Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11e23
(241 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0096 + 9956702-9956818,9957056-9957265 30 0.30
11_01_0475 - 3669734-3671452 27 2.8
05_07_0219 - 28474661-28475146,28475979-28476644 27 2.8
03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,588... 27 2.8
10_08_0485 + 18235597-18236256,18236353-18236400,18236522-182366... 26 3.7
06_03_0513 - 21635040-21635549,21635724-21635840,21635970-216362... 26 4.9
02_05_0235 - 27068516-27069032,27069697-27069788,27070056-270702... 26 4.9
02_05_0076 + 25637752-25639062,25639221-25639297,25640962-256410... 25 6.5
02_04_0167 - 20510507-20510955,20511058-20511262 25 6.5
01_06_0258 + 27950196-27950749,27953670-27954570 25 8.5
>11_03_0096 + 9956702-9956818,9957056-9957265
Length = 108
Score = 29.9 bits (64), Expect = 0.30
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Frame = +3
Query: 48 GRIVVYGGR----GALGAACVNHFKSFNYWV-ANIDLNPNEKADFNITVPKDASWVEQED 212
GR GGR G + AA + +YW + P+ N+ V + + E+
Sbjct: 13 GRAATLGGRRQLAGQVQAAARRRGHAASYWTWGSRSACPSTHGSQNVAVEMEEEEGQMEE 72
Query: 213 HVVNELG 233
HVV ELG
Sbjct: 73 HVVQELG 79
>11_01_0475 - 3669734-3671452
Length = 572
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 91 AAPNAPRPPYTTILPVAITTSS 26
AA + PRPP ++LP +TT +
Sbjct: 134 AAADPPRPPSLSLLPAYVTTDA 155
>05_07_0219 - 28474661-28475146,28475979-28476644
Length = 383
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 100 FTQAAPNAPRPPYTTILPVAITTSSL 23
F AAP P PP T++P T+++
Sbjct: 169 FDDAAPTVPPPPPATMIPPPTVTATI 194
>03_02_0142 +
5877480-5879663,5879783-5879898,5880749-5882419,
5882570-5882618,5882703-5882941,5883073-5883174,
5883634-5883862
Length = 1529
Score = 26.6 bits (56), Expect = 2.8
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = -3
Query: 191 SVFGDSNVKIGFFVGIQINVSDPIIKRFKMVHAGSTQCPTTTVHDDSTGSHYNVFSRSQL 12
S +GD + F G Q P +R +M H S T T H + G + F +S
Sbjct: 378 SSYGDGTMHNPNFAGFQHAARTPYEQRDRMQHDSSN--ATGTNHQSTAGVNNGYFQQSMK 435
Query: 11 Q 9
Q
Sbjct: 436 Q 436
>10_08_0485 +
18235597-18236256,18236353-18236400,18236522-18236644,
18237062-18237211,18237702-18237873,18237965-18238025,
18238129-18238237
Length = 440
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 30 DVVMATGRIVVYGGRGALGAACVNHFKSFNYWVANIDLN 146
D +MATG ++ GG L + +NH + N + + LN
Sbjct: 320 DPIMATGWHMIIGGLPLLVISVLNHDPALNGHLQELTLN 358
>06_03_0513 -
21635040-21635549,21635724-21635840,21635970-21636224,
21636429-21636569,21636672-21636830,21637148-21637153
Length = 395
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -3
Query: 128 DPIIKRFKMVHAGSTQCPTTTVHDDSTGSHYNVFSRSQL 12
D ++ +H+ PT VHDD+T + Y+V + +Q+
Sbjct: 254 DAVLHETLRLHSPVPVLPTRFVHDDTTLAGYDVPAGTQV 292
>02_05_0235 -
27068516-27069032,27069697-27069788,27070056-27070289,
27071569-27071676,27071796-27071855,27072368-27072443,
27072550-27072710,27076919-27076981,27077061-27077148,
27077568-27078308,27078406-27079033,27079314-27079368,
27082073-27083527
Length = 1425
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 122 IIKRFKMVHAGSTQCPTTTVHDD 54
+IK K+ AG+ +C T +HDD
Sbjct: 236 VIKARKLELAGNGKCDTVAMHDD 258
>02_05_0076 +
25637752-25639062,25639221-25639297,25640962-25641095,
25641178-25641242,25641431-25641482,25641912-25641994,
25642128-25642221,25642332-25642861
Length = 781
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -3
Query: 158 FFVGIQINVSDPIIKRFKMVHAGSTQCPTTTVHDD 54
F + +Q +S + K ++ H ST C T H D
Sbjct: 472 FSISVQYLLSSSMDKTVRLWHVSSTYCLKTFSHSD 506
>02_04_0167 - 20510507-20510955,20511058-20511262
Length = 217
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 33 VVMATGRIVVYGGRGALGAACV 98
+V A R++ GGRG G CV
Sbjct: 13 IVAALTRVIADGGRGGGGGVCV 34
>01_06_0258 + 27950196-27950749,27953670-27954570
Length = 484
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -2
Query: 93 RQHPMPHDHRTRRFY 49
RQ P+ DHRTR FY
Sbjct: 313 RQTPLVLDHRTRPFY 327
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,398,701
Number of Sequences: 37544
Number of extensions: 106144
Number of successful extensions: 353
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 14,793,348
effective HSP length: 58
effective length of database: 12,615,796
effective search space used: 264931716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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