Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11e23
(241 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1677| Best HMM Match : WD40 (HMM E-Value=0.00074) 73 3e-14
SB_1587| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.3
SB_48173| Best HMM Match : WD40 (HMM E-Value=7.3e-18) 27 1.8
SB_38123| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.4
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35) 27 2.4
SB_19201| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.1
SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4
SB_59270| Best HMM Match : RVT_1 (HMM E-Value=7.8e-06) 25 7.2
SB_34904| Best HMM Match : RVT_1 (HMM E-Value=1.1e-06) 25 7.2
SB_32142| Best HMM Match : RVT_1 (HMM E-Value=2.29953e-42) 25 7.2
SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034) 25 7.2
SB_12560| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.2
SB_4450| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.2
SB_51094| Best HMM Match : VWA (HMM E-Value=0) 25 7.2
SB_15843| Best HMM Match : VWA (HMM E-Value=4.1e-35) 25 7.2
SB_59601| Best HMM Match : AT_hook (HMM E-Value=3.3) 25 9.5
SB_41884| Best HMM Match : RVT_1 (HMM E-Value=1.69557e-43) 25 9.5
SB_41028| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_36682| Best HMM Match : RVT_1 (HMM E-Value=0.0067) 25 9.5
SB_31644| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_25070| Best HMM Match : RVT_1 (HMM E-Value=1.4e-15) 25 9.5
SB_14018| Best HMM Match : AT_hook (HMM E-Value=3.3) 25 9.5
SB_12945| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_8735| Best HMM Match : RVT_1 (HMM E-Value=2.00386e-43) 25 9.5
SB_3826| Best HMM Match : AT_hook (HMM E-Value=3.3) 25 9.5
SB_777| Best HMM Match : DUF1126 (HMM E-Value=5.1) 25 9.5
SB_58494| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_53622| Best HMM Match : RVT_1 (HMM E-Value=7.90332e-43) 25 9.5
SB_44400| Best HMM Match : AT_hook (HMM E-Value=3.3) 25 9.5
SB_44111| Best HMM Match : OAD_gamma (HMM E-Value=4.4) 25 9.5
SB_42893| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_42164| Best HMM Match : AT_hook (HMM E-Value=3.3) 25 9.5
SB_41699| Best HMM Match : RVT_1 (HMM E-Value=1.90002e-41) 25 9.5
SB_41433| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.6e-07) 25 9.5
SB_34465| Best HMM Match : AT_hook (HMM E-Value=3.3) 25 9.5
SB_31122| Best HMM Match : RVT_1 (HMM E-Value=0.0033) 25 9.5
SB_27648| Best HMM Match : Ribosomal_L18ae (HMM E-Value=2.8) 25 9.5
SB_27308| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_25973| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 25 9.5
SB_17490| Best HMM Match : AT_hook (HMM E-Value=3.3) 25 9.5
SB_15954| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_12357| Best HMM Match : RVT_1 (HMM E-Value=7.69999e-41) 25 9.5
SB_8964| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_3152| Best HMM Match : RVT_1 (HMM E-Value=5.4006e-42) 25 9.5
>SB_1677| Best HMM Match : WD40 (HMM E-Value=0.00074)
Length = 1087
Score = 73.3 bits (172), Expect = 3e-14
Identities = 30/61 (49%), Positives = 45/61 (73%)
Frame = +3
Query: 36 VMATGRIVVYGGRGALGAACVNHFKSFNYWVANIDLNPNEKADFNITVPKDASWVEQEDH 215
V++ R+++YGG+GALGA CV++FK+ +WVA++DL PNE+A N+ V SW EQ +
Sbjct: 90 VVSGSRVLIYGGKGALGATCVSYFKAREWWVASVDLFPNEEAHANVIVDPAKSWDEQNNE 149
Query: 216 V 218
V
Sbjct: 150 V 150
>SB_1587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1497
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 63 YGGRGALGAACVNHFKSFNYWVANIDLNPNEKADFNI 173
Y ALGAA + + W+A L+PN+ A+ +I
Sbjct: 805 YDAMAALGAAGMVDVQKLAKWIAESHLDPNDPANADI 841
>SB_48173| Best HMM Match : WD40 (HMM E-Value=7.3e-18)
Length = 659
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +1
Query: 154 KKPILTLLSPKT-LHGLNRKIM 216
KKP LL +T LHGLNRK++
Sbjct: 151 KKPKTALLDKRTSLHGLNRKVI 172
>SB_38123| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 853
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 82 NAPRPPYTTILPVAITTSSLVHN 14
N P+PP P +IT+S HN
Sbjct: 371 NTPKPPIELPTPASITSSQTAHN 393
>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
Length = 2748
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -3
Query: 167 KIGFFVGI-QINVSDPIIKRFKMVHAGSTQCPTTTV 63
++G FV + Q+ DP++ F + H PTTT+
Sbjct: 75 RVGPFVRLKQVYTLDPLLPEFSITHITQAGYPTTTL 110
>SB_19201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1095
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 100 FTQAAPNAPRPPYTTILPV 44
FT A P PR P+T +LP+
Sbjct: 236 FTHALPLTPRIPFTHVLPL 254
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 100 FTQAAPNAPRPPYTTILPV 44
FT A P PR P+T LP+
Sbjct: 212 FTHALPLTPRIPFTLALPL 230
>SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2973
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 119 IKRFKMVHAGSTQCPTTTVHD 57
+K+ K++H GS PT T++D
Sbjct: 2336 LKKTKVMHLGSEIAPTVTIND 2356
>SB_59270| Best HMM Match : RVT_1 (HMM E-Value=7.8e-06)
Length = 509
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +3
Query: 117 NYWVANIDL--NPNEKADFNITVPKDAS 194
++WV+NID+ N + +IT+ DAS
Sbjct: 350 DWWVSNIDISFNDTNRPPIDITIYSDAS 377
>SB_34904| Best HMM Match : RVT_1 (HMM E-Value=1.1e-06)
Length = 530
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 119 IKRFKMVHAGSTQCPTTTVHD 57
+K+ K++H GS PT T++D
Sbjct: 248 LKKTKVMHLGSEIAPTLTIND 268
>SB_32142| Best HMM Match : RVT_1 (HMM E-Value=2.29953e-42)
Length = 590
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 119 IKRFKMVHAGSTQCPTTTVHD 57
+K+ K++H GS PT T++D
Sbjct: 456 LKKTKVMHLGSEIAPTLTIND 476
>SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034)
Length = 3404
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 128 DPIIKRFKMVHAGSTQCPTTTVHDDSTG 45
DPI F+ + CP T +HD+ TG
Sbjct: 2889 DPI--HFRSILCDDETCPYTEMHDNKTG 2914
>SB_12560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 200
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +3
Query: 117 NYWVANIDL--NPNEKADFNITVPKDAS 194
++WV+NID+ N + +IT+ DAS
Sbjct: 151 DWWVSNIDISFNDTNRPPIDITIYSDAS 178
>SB_4450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 410
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 119 IKRFKMVHAGSTQCPTTTVHD 57
+K+ K++H GS PT T++D
Sbjct: 128 LKKTKVMHLGSEIAPTLTIND 148
>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
Length = 3544
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 111 SFNYWVANIDLNPNEKADFNITVPKDASWVEQEDHVVNELGNA 239
+F+Y V + +K DFN P + +E+ +++V E G++
Sbjct: 825 TFHYSVILYGSSSVKKFDFNTAFPYREALIEESNNLVKENGSS 867
>SB_15843| Best HMM Match : VWA (HMM E-Value=4.1e-35)
Length = 1686
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 111 SFNYWVANIDLNPNEKADFNITVPKDASWVEQEDHVVNELGNA 239
+F+Y V + +K DFN P + +E+ +++V E G++
Sbjct: 567 TFHYSVILYGSSSVKKFDFNTAFPYREALIEESNNLVKENGSS 609
>SB_59601| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 370
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 119 IKRFKMVHAGSTQCPTTTVHD 57
+K+ K++H GS PT T++D
Sbjct: 108 LKKTKVMHLGSEIAPTFTIND 128
>SB_41884| Best HMM Match : RVT_1 (HMM E-Value=1.69557e-43)
Length = 677
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 119 IKRFKMVHAGSTQCPTTTVHD 57
+K+ K++H GS PT T++D
Sbjct: 416 LKKTKVMHLGSEIAPTFTIND 436
>SB_41028| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 798
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 119 IKRFKMVHAGSTQCPTTTVHD 57
+K+ K++H GS PT T++D
Sbjct: 494 LKKTKVMHLGSEIAPTFTIND 514
>SB_36682| Best HMM Match : RVT_1 (HMM E-Value=0.0067)
Length = 308
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 119 IKRFKMVHAGSTQCPTTTVHD 57
+K+ K++H GS PT T++D
Sbjct: 178 LKKTKVMHLGSEIAPTFTIND 198
>SB_31644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 935
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 174 TVPKDASWVEQEDHVVNELGN 236
T P+DA + DHVV EL N
Sbjct: 896 TEPRDADCIRMYDHVVFELVN 916
>SB_25070| Best HMM Match : RVT_1 (HMM E-Value=1.4e-15)
Length = 385
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 119 IKRFKMVHAGSTQCPTTTVHD 57
+K+ K++H GS PT T++D
Sbjct: 211 LKKTKVMHLGSEIAPTFTIND 231
>SB_14018| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 238
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 119 IKRFKMVHAGSTQCPTTTVHD 57
+K+ K++H GS PT T++D
Sbjct: 25 LKKTKVMHLGSEIAPTFTIND 45
>SB_12945| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 119 IKRFKMVHAGSTQCPTTTVHD 57
+K+ K++H GS PT T++D
Sbjct: 24 LKKTKVMHLGSEIAPTFTIND 44
>SB_8735| Best HMM Match : RVT_1 (HMM E-Value=2.00386e-43)
Length = 661
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 119 IKRFKMVHAGSTQCPTTTVHD 57
+K+ K++H GS PT T++D
Sbjct: 410 LKKTKVMHLGSEIAPTFTIND 430
>SB_3826| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 238
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 119 IKRFKMVHAGSTQCPTTTVHD 57
+K+ K++H GS PT T++D
Sbjct: 25 LKKTKVMHLGSEIAPTFTIND 45
>SB_777| Best HMM Match : DUF1126 (HMM E-Value=5.1)
Length = 173
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 119 IKRFKMVHAGSTQCPTTTVHD 57
+K+ K++H GS PT T++D
Sbjct: 25 LKKTKVMHLGSEIAPTFTIND 45
>SB_58494| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 119 IKRFKMVHAGSTQCPTTTVHD 57
+K+ K++H GS PT T++D
Sbjct: 25 LKKTKVMHLGSEIAPTFTIND 45
>SB_53622| Best HMM Match : RVT_1 (HMM E-Value=7.90332e-43)
Length = 458
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 119 IKRFKMVHAGSTQCPTTTVHD 57
+K+ K++H GS PT T++D
Sbjct: 245 LKKTKVMHLGSEIAPTFTIND 265
>SB_44400| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 328
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 119 IKRFKMVHAGSTQCPTTTVHD 57
+K+ K++H GS PT T++D
Sbjct: 25 LKKTKVMHLGSEIAPTFTIND 45
>SB_44111| Best HMM Match : OAD_gamma (HMM E-Value=4.4)
Length = 305
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 118 LKDLKWFTQAAPNAPRPPYTTI 53
L +L W APN PRP T+
Sbjct: 80 LMNLHWRESRAPNHPRPDLNTL 101
>SB_42893| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 950
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 119 IKRFKMVHAGSTQCPTTTVHD 57
+K+ K++H GS PT T++D
Sbjct: 538 LKKTKVMHLGSEIAPTFTIND 558
>SB_42164| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 290
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 119 IKRFKMVHAGSTQCPTTTVHD 57
+K+ K++H GS PT T++D
Sbjct: 77 LKKTKVMHLGSEIAPTFTIND 97
>SB_41699| Best HMM Match : RVT_1 (HMM E-Value=1.90002e-41)
Length = 352
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 119 IKRFKMVHAGSTQCPTTTVHD 57
+K+ K++H GS PT T++D
Sbjct: 301 LKKTKVMHLGSEIAPTFTIND 321
>SB_41433| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.6e-07)
Length = 175
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +3
Query: 120 YWVANIDLNPNEKADFNITVPKDASWVEQE-DHVVNE 227
YW+ ++D DF + + WV+ DH +NE
Sbjct: 89 YWILSVDSIDVVNMDFTVDLFLRQEWVDPRLDHGLNE 125
>SB_34465| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 280
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 119 IKRFKMVHAGSTQCPTTTVHD 57
+K+ K++H GS PT T++D
Sbjct: 25 LKKTKVMHLGSEIAPTFTIND 45
>SB_31122| Best HMM Match : RVT_1 (HMM E-Value=0.0033)
Length = 324
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 119 IKRFKMVHAGSTQCPTTTVHD 57
+K+ K++H GS PT T++D
Sbjct: 273 LKKTKVMHLGSEIAPTFTIND 293
>SB_27648| Best HMM Match : Ribosomal_L18ae (HMM E-Value=2.8)
Length = 796
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 118 LKDLKWFTQAAPNAPRPPYTTI 53
L +L W APN PRP T+
Sbjct: 398 LMNLHWRESRAPNHPRPDLNTL 419
>SB_27308| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 119 IKRFKMVHAGSTQCPTTTVHD 57
+K+ K++H GS PT T++D
Sbjct: 60 LKKTKVMHLGSEIAPTFTIND 80
>SB_25973| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 416
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 119 IKRFKMVHAGSTQCPTTTVHD 57
+K+ K++H GS PT T++D
Sbjct: 134 LKKTKVMHLGSEIAPTFTIND 154
>SB_17490| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 348
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 119 IKRFKMVHAGSTQCPTTTVHD 57
+K+ K++H GS PT T++D
Sbjct: 77 LKKTKVMHLGSEIAPTFTIND 97
>SB_15954| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 118 LKDLKWFTQAAPNAPRPPYTTI 53
L +L W APN PRP T+
Sbjct: 44 LMNLHWRESRAPNHPRPDLNTL 65
>SB_12357| Best HMM Match : RVT_1 (HMM E-Value=7.69999e-41)
Length = 889
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 119 IKRFKMVHAGSTQCPTTTVHD 57
+K+ K++H GS PT T++D
Sbjct: 812 LKKTKVMHLGSEIAPTFTIND 832
>SB_8964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 119 IKRFKMVHAGSTQCPTTTVHD 57
+K+ K++H GS PT T++D
Sbjct: 25 LKKTKVMHLGSEIAPTFTIND 45
>SB_3152| Best HMM Match : RVT_1 (HMM E-Value=5.4006e-42)
Length = 717
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 119 IKRFKMVHAGSTQCPTTTVHD 57
+K+ K++H GS PT T++D
Sbjct: 600 LKKTKVMHLGSEIAPTFTIND 620
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,304,250
Number of Sequences: 59808
Number of extensions: 114890
Number of successful extensions: 435
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 16,821,457
effective HSP length: 57
effective length of database: 13,412,401
effective search space used: 295072822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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