Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11e23
         (241 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33600.1 68415.m04118 cinnamoyl-CoA reductase family similar ...    30   0.19 
At3g02690.1 68416.m00260 integral membrane family protein simila...    28   0.76 
At1g75290.1 68414.m08746 isoflavone reductase, putative similar ...    26   4.0  
At4g03820.2 68417.m00529 expressed protein                             25   9.3  
At4g03820.1 68417.m00528 expressed protein                             25   9.3  
At3g09230.1 68416.m01097 myb family transcription factor identic...    25   9.3  

>At2g33600.1 68415.m04118 cinnamoyl-CoA reductase family similar to
           cinnamoyl-CoA reductase from Pinus taeda [GI:17978649],
           Eucalyptus gunnii [GI:2058311]
          Length = 321

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 36  VMATGRIVVYGGRGALGAACVNHFKSFNYWVANIDLNP-NEK 158
           V+  G++ V G  G LG+  VNH  S +Y+V     +P NEK
Sbjct: 3   VVQKGKVCVTGAGGFLGSWVVNHLLSRDYFVHGTVRDPGNEK 44


>At3g02690.1 68416.m00260 integral membrane family protein similar
           to PecM protein (GI:5852331) {Vogesella indigofera} and
           PecM protein (SP:P42194) [Erwinia chrysanthemi]
          Length = 417

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 30  DVVMATGRIVVYGGRGALGAACVNHFKSFNYWVANIDLN 146
           D +MATG  +V GG   L  + +NH   FN  + ++  N
Sbjct: 299 DPIMATGWHMVIGGLPLLAISVINHDPVFNGSLQDLSTN 337


>At1g75290.1 68414.m08746 isoflavone reductase, putative similar to
           SP|P52577 Isoflavone reductase homolog P3 (EC 1.3.1.-)
           {Arabidopsis thaliana}; contains Pfam profile PF02716:
           Isoflavone reductase
          Length = 323

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 188 VFGDSNVKIGFFVGIQINVSDPI 120
           +FGD NVK+ +F+ + IN  + I
Sbjct: 181 IFGDGNVKVEYFIAV-INKEEDI 202


>At4g03820.2 68417.m00529 expressed protein 
          Length = 453

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -3

Query: 110 FKMVHAGST-QCPTTTVHDDSTGSHYNVFSRS 18
           F +++ G T +CPTTT H        NV   S
Sbjct: 329 FDVLYDGETPKCPTTTQHSQILSRRRNVVQSS 360


>At4g03820.1 68417.m00528 expressed protein 
          Length = 437

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -3

Query: 110 FKMVHAGST-QCPTTTVHDDSTGSHYNVFSRS 18
           F +++ G T +CPTTT H        NV   S
Sbjct: 329 FDVLYDGETPKCPTTTQHSQILSRRRNVVQSS 360


>At3g09230.1 68416.m01097 myb family transcription factor identical
           to transforming protein (myb) homolog GB:S22520
           [Arabidopsis thaliana]
          Length = 393

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 109 LKWFTQAAPNAPRPPYTTILPVAITTSSLVHNFK 8
           L+W  Q  PN  R  +T +   AI  +  +H  K
Sbjct: 95  LRWCNQLNPNLIRNSFTEVEDQAIIAAHAIHGNK 128


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,146,431
Number of Sequences: 28952
Number of extensions: 86237
Number of successful extensions: 253
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 12,070,560
effective HSP length: 58
effective length of database: 10,391,344
effective search space used: 218218224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)