Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11e22
(614 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93379-1|CAB07589.1| 218|Caenorhabditis elegans Hypothetical pr... 30 1.5
AF026212-2|AAF99972.1| 1009|Caenorhabditis elegans Hypothetical ... 30 1.5
AC119287-1|AAO38568.1| 218|Caenorhabditis elegans Glutathione s... 30 1.5
U76402-1|AAB39734.1| 777|Caenorhabditis elegans degenerin protein. 29 3.5
U40798-3|AAA81473.2| 777|Caenorhabditis elegans Uncoordinated p... 29 3.5
Z82090-3|CAD98728.1| 1516|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z82090-2|CAB05007.2| 1501|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z82090-1|CAB05006.1| 1508|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z70205-10|CAA94122.2| 887|Caenorhabditis elegans Hypothetical p... 27 8.1
Z68003-5|CAA91979.2| 887|Caenorhabditis elegans Hypothetical pr... 27 8.1
>Z93379-1|CAB07589.1| 218|Caenorhabditis elegans Hypothetical
protein F21H7.1 protein.
Length = 218
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 297 DETKQVHDKMNVKHHSPVYSVIMKLKKEVDINH--GDSVVWKNIEMA 431
+E KQ+HDK+ + + ++ ++ ++ KE GD + W ++ +A
Sbjct: 125 EEVKQIHDKVYIPAKNLMFKILTRILKENKSGFLVGDGLTWADLVVA 171
>AF026212-2|AAF99972.1| 1009|Caenorhabditis elegans Hypothetical
protein F52G3.4 protein.
Length = 1009
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +2
Query: 515 LTMQRKIPSTTLSVKTQRENNEDFHLNATELLK 613
LT ++ + +++ ++EN ED++ N TELL+
Sbjct: 469 LTWEQHVLEEVAAIRKRKENPEDYYSNITELLR 501
>AC119287-1|AAO38568.1| 218|Caenorhabditis elegans Glutathione
s-transferase protein34 protein.
Length = 218
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/48 (22%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +3
Query: 294 EDETKQVHDKMNVKHHSPVYSVIMKLKKEVDINH--GDSVVWKNIEMA 431
E+E K++HD++ + + ++ ++ ++ KE + GD + W ++ +A
Sbjct: 124 EEEVKRIHDEVYIPVKNLLFKILTRILKESKSEYLVGDGLTWADLVVA 171
>U76402-1|AAB39734.1| 777|Caenorhabditis elegans degenerin protein.
Length = 777
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Frame = +3
Query: 321 KMNVKHHSPVYSVIMKLKKEVDINHGDSVVW---KNIEMASGPNSPVQTEQDIEDIFG-D 488
K KH+SP+ + + ++ D + W N + S P + E+ FG
Sbjct: 322 KQIAKHNSPLPCLCQSISHHCMVHPKDEIRWWNPNNYTVYSVTEPPTTEITETEEAFGLS 381
Query: 489 SLKDVGSFH*RCKEKYL 539
LKD G+ + KE +
Sbjct: 382 DLKDAGAITTQTKENLI 398
>U40798-3|AAA81473.2| 777|Caenorhabditis elegans Uncoordinated
protein 8 protein.
Length = 777
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Frame = +3
Query: 321 KMNVKHHSPVYSVIMKLKKEVDINHGDSVVW---KNIEMASGPNSPVQTEQDIEDIFG-D 488
K KH+SP+ + + ++ D + W N + S P + E+ FG
Sbjct: 322 KQIAKHNSPLPCLCQSISHHCMVHPKDEIRWWNPNNYTVYSVTEPPTTEITETEEAFGLS 381
Query: 489 SLKDVGSFH*RCKEKYL 539
LKD G+ + KE +
Sbjct: 382 DLKDAGAITTQTKENLI 398
>Z82090-3|CAD98728.1| 1516|Caenorhabditis elegans Hypothetical protein
ZK337.1c protein.
Length = 1516
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +3
Query: 321 KMNVKHHSPVYSVIMKLKKEVDINHGDSVVWKNIEMASGPNSPVQTEQDIE-DIFGDSLK 497
+MN++ Y V + +D+N+ S KN+E+ PN V Q D+ GD +
Sbjct: 918 EMNLRVDPQGYKVDRNIPFVIDLNNNSSDFSKNLELI-WPNDVVDGSQKARLDVIGDMMG 976
Query: 498 DV 503
V
Sbjct: 977 PV 978
>Z82090-2|CAB05007.2| 1501|Caenorhabditis elegans Hypothetical protein
ZK337.1b protein.
Length = 1501
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +3
Query: 321 KMNVKHHSPVYSVIMKLKKEVDINHGDSVVWKNIEMASGPNSPVQTEQDIE-DIFGDSLK 497
+MN++ Y V + +D+N+ S KN+E+ PN V Q D+ GD +
Sbjct: 921 EMNLRVDPQGYKVDRNIPFVIDLNNNSSDFSKNLELI-WPNDVVDGSQKARLDVIGDMMG 979
Query: 498 DV 503
V
Sbjct: 980 PV 981
>Z82090-1|CAB05006.1| 1508|Caenorhabditis elegans Hypothetical protein
ZK337.1a protein.
Length = 1508
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +3
Query: 321 KMNVKHHSPVYSVIMKLKKEVDINHGDSVVWKNIEMASGPNSPVQTEQDIE-DIFGDSLK 497
+MN++ Y V + +D+N+ S KN+E+ PN V Q D+ GD +
Sbjct: 910 EMNLRVDPQGYKVDRNIPFVIDLNNNSSDFSKNLELI-WPNDVVDGSQKARLDVIGDMMG 968
Query: 498 DV 503
V
Sbjct: 969 PV 970
>Z70205-10|CAA94122.2| 887|Caenorhabditis elegans Hypothetical
protein E02H4.3a protein.
Length = 887
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 491 PKRRGIISLTMQRKIPSTTLSVKTQRENNEDFHL 592
P R G+ + + K+P S +TQ ++++D HL
Sbjct: 506 PSRSGLQASQARPKVPEIVSSQRTQHQDDKDGHL 539
>Z68003-5|CAA91979.2| 887|Caenorhabditis elegans Hypothetical
protein E02H4.3a protein.
Length = 887
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 491 PKRRGIISLTMQRKIPSTTLSVKTQRENNEDFHL 592
P R G+ + + K+P S +TQ ++++D HL
Sbjct: 506 PSRSGLQASQARPKVPEIVSSQRTQHQDDKDGHL 539
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,679,674
Number of Sequences: 27780
Number of extensions: 201610
Number of successful extensions: 560
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -