Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11e22
         (614 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g14710.1 68415.m01654 F-box family protein contains Pfam prof...    31   0.80 
At5g28160.1 68418.m03403 kelch repeat-containing F-box family pr...    29   1.9  
At3g63200.1 68416.m07100 patatin-related low similarity to patat...    29   3.2  
At2g35210.2 68415.m04318 human Rev interacting-like family prote...    28   5.7  
At2g35210.1 68415.m04319 human Rev interacting-like family prote...    28   5.7  

>At2g14710.1 68415.m01654 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 362

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +3

Query: 318 DKMNVKHHSPVYSVIMKLKKEVDINH--GDSVVWKNIEMASGPNSP 449
           D+ ++     V   I     E  INH  GD VVWKN    S PN P
Sbjct: 236 DRFSLLKQCMVTKKIEVFVTENKINHENGDDVVWKNFMTFSSPNLP 281


>At5g28160.1 68418.m03403 kelch repeat-containing F-box family
           protein low similarity to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 324

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 318 DKMNVKHHSPVYSVIMKLKKEVDINHGDSVVWKNIEMA 431
           DK+++ H   ++  ++ L+K     HG   VW NIE A
Sbjct: 271 DKVDLSHDKDIWCAVIALEKR----HGSDEVWGNIEWA 304


>At3g63200.1 68416.m07100 patatin-related low similarity to
           patatin-like latex protein allergen Hev b 7 - Hevea
           brasiliensis, EMBL:AF113546; contains patatin domain
           PF01734
          Length = 384

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = +2

Query: 11  CWQHEDYIRI---AVSDAGAEHLLQHLHDETTQSG 106
           CW   DY+RI    ++  GAE LL+    ET   G
Sbjct: 305 CWNRTDYVRIQANGLTSGGAEELLKERGVETAPFG 339


>At2g35210.2 68415.m04318 human Rev interacting-like family protein
           / hRIP family protein similar to ARFGAP1 protein
           GI:7211442 from [Homo sapiens]; contains InterPro
           accession IPR001164: Human Rev interacting-like protein
           (hRIP)
          Length = 371

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -3

Query: 549 SVVEGIFLCIVSEMIPRLLGSHRKYPQYLALSEPAS*GRRPFLYSSKRR 403
           SV  GIFLCI    + R LG H  + +   L   +S   +  +Y    R
Sbjct: 37  SVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSSEQLKMMIYGGNNR 85


>At2g35210.1 68415.m04319 human Rev interacting-like family protein
           / hRIP family protein similar to ARFGAP1 protein
           GI:7211442 from [Homo sapiens]; contains InterPro
           accession IPR001164: Human Rev interacting-like protein
           (hRIP)
          Length = 395

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -3

Query: 549 SVVEGIFLCIVSEMIPRLLGSHRKYPQYLALSEPAS*GRRPFLYSSKRR 403
           SV  GIFLCI    + R LG H  + +   L   +S   +  +Y    R
Sbjct: 37  SVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSSEQLKMMIYGGNNR 85


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,983,573
Number of Sequences: 28952
Number of extensions: 186310
Number of successful extensions: 567
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)