Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11e20
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    40   2e-04
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    31   0.099
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    31   0.099
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    30   0.30 
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    28   0.92 
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|...    26   4.9  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    26   4.9  
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...    25   6.5  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   6.5  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    25   6.5  
SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.6  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    25   8.6  
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.6  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 22/62 (35%), Positives = 35/62 (56%)
 Frame = +3

Query: 390 QVQQWFRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMIGMFDKDRNGQINLDEFD 569
           +V++ F+  DKD +G+IT  EL   L +  G+  S+     MI   D D +G IN +EF 
Sbjct: 86  EVREAFKVFDKDGNGYITVEELTHVLTSL-GERLSQEEVADMIREADTDGDGVINYEEFS 144

Query: 570 KL 575
           ++
Sbjct: 145 RV 146



 Score = 36.7 bits (81), Expect = 0.003
 Identities = 21/59 (35%), Positives = 31/59 (52%)
 Frame = +3

Query: 390 QVQQWFRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMIGMFDKDRNGQINLDEF 566
           + ++ F   D+DQ G ITS EL   ++ + GQ+ +      MI   D D NG I+  EF
Sbjct: 13  EFREAFSLFDRDQDGNITSNEL-GVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEF 70


>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 31.5 bits (68), Expect = 0.099
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +3

Query: 390 QVQQWFRAVDKD-QSGFITSTELRSALVNAQGQTFSETAC--NLMIGMFDKDRNGQINLD 560
           ++QQW++   KD  SG +  +E +   +  Q   F + +     +  +FD D+NG I+  
Sbjct: 26  ELQQWYKGFFKDCPSGHLNKSEFQK--IYKQFFPFGDPSAFAEYVFNVFDADKNGYIDFK 83

Query: 561 EF 566
           EF
Sbjct: 84  EF 85



 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 495 ETACNLMIGMFDKDRNGQINLDEF 566
           E   N +  M DK+++GQ+ L+EF
Sbjct: 146 EKRVNKIFNMMDKNKDGQLTLEEF 169


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 31.5 bits (68), Expect = 0.099
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +3

Query: 405 FRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMIGM----FDKDRNGQINLDEFDK 572
           F+  D D+ G+I++ EL   L    G    E     ++       DKDR+G+I+ +EF  
Sbjct: 99  FKIYDIDRDGYISNGELYLVLKMMVGTNLREDQLQQIVDKTIMEVDKDRDGKISFEEFKD 158

Query: 573 LYTYVN 590
           + +  N
Sbjct: 159 IVSGSN 164


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +3

Query: 405 FRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMIGMFDKDRNGQINLDEF 566
           FR  DKD SG+I + +  +  +   G+  S+    LM+   D   +G  +  +F
Sbjct: 84  FRVFDKDNSGYIETAKF-ADYMKTLGEKLSDNEVQLMVQEADPTNSGSFDYYDF 136


>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +3

Query: 405 FRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMIGMFDKDRNGQINLDEF 566
           F+  DKD +G I   ELR  L +   +  +E    L+ G+  KD  G +N  +F
Sbjct: 83  FQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVKD--GMVNYHDF 134


>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 20/66 (30%), Positives = 29/66 (43%)
 Frame = +3

Query: 297 GQAAYGGMPPGQLEIGHGPYPSIGVGGTITPQVQQWFRAVDKDQSGFITSTELRSALVNA 476
           G+ A+GG     L+   GP   + V G I    + W   +    SG + +TEL S  V +
Sbjct: 304 GRQAWGGFSREALK-NWGPLCRLAVPGVIMICSEYWAFELVTFASGVLGTTELASMSVLS 362

Query: 477 QGQTFS 494
              T S
Sbjct: 363 TTSTLS 368


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 536 VFVEHTNHQIASSFGKSLT 480
           V+  H N QI SSFG SLT
Sbjct: 33  VWTGHKNGQIKSSFGPSLT 51


>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 267 LQMAYNSGYPGQAAYGG 317
           +Q  Y+ GYPG   YGG
Sbjct: 61  MQNKYSEGYPGARYYGG 77


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -2

Query: 537  GLCRTYQSSDCKQFRKKFDLER 472
            GLC T  ++D + F+++ ++ER
Sbjct: 2002 GLCNTLLTTDSETFKRRLNIER 2023


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -2

Query: 363 WKGTVHVQFLIGLVAFHRKLPVLDIRNCRPFVVS 262
           W G    + L+GL+     + ++DI++ RP + S
Sbjct: 297 WTGNPKDKELVGLIPLLEFIAIMDIKDVRPVLKS 330


>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 255

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 136 RPLIRSVSKLSNLKTFHKNKYKFFNSS 216
           RP+ +S S++S L+ F+K   K F++S
Sbjct: 34  RPIQKSFSEISILRVFNKPPIKKFHNS 60


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 324 PGQLEIGHGPYPSIGVGGTITP 389
           P  L +GH P PS     ++TP
Sbjct: 207 PSNLPLGHPPPPSDSANSSVTP 228


>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 85

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = +3

Query: 66  HQKY*SLNFSLRLQQNTFVVTIPP----STNKICI 158
           H  Y  LNFSLR  +N  ++   P    S N +CI
Sbjct: 42  HGHYCLLNFSLRENKNYLIIVYLPIEGFSANHMCI 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,462,921
Number of Sequences: 5004
Number of extensions: 50201
Number of successful extensions: 123
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)