Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11e19
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    69   5e-13
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   1.8  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    27   1.8  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    27   1.8  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.4  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    26   3.2  
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p...    26   3.2  
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    26   3.2  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    26   3.2  
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom...    26   4.2  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    26   4.2  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    25   5.5  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    25   5.5  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   7.3  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    25   7.3  
SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   7.3  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    25   9.6  
SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces...    25   9.6  

>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 68.9 bits (161), Expect = 5e-13
 Identities = 35/131 (26%), Positives = 69/131 (52%), Gaps = 1/131 (0%)
 Frame = +3

Query: 99  TENALVRKLQDLNSSQQSIQTLSLWLIHHRKHHAAVVKTWLKELLKAKDSKQLTFMYLAN 278
           T + +  KL  LN +Q+SI  ++ W++ H+++   +V+ WL+ L ++  +K+L  +YL N
Sbjct: 4   TPDTVSSKLATLNETQESITGIAHWVMFHKRYADEIVQIWLEALYESSSNKKLLLLYLLN 63

Query: 279 DVIQNSK-KKGPEYGKEFGEVLVESFQHMAKTGMESKTKHSLHRILKIWEERGVYDAEKI 455
           +V+Q S+ KK  EY       +V S    A   + +  K  +  +  +W +RG++  E +
Sbjct: 64  EVVQQSRVKKISEYIDAVSPYVVNSVAD-AYASVPASIKTKIKYVFDVWCQRGIFSKEIL 122

Query: 456 KDFKDAIAGIE 488
              ++     E
Sbjct: 123 LSLQERFNNAE 133


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
 Frame = -1

Query: 488 FDASNSIFKVLNFFCIIYTSFFPYLQYSMQGMLC----FRFHSSFGHMLK*FYKNFPKLL 321
           F  S S    L+   I+Y S FP L +     LC      F  S  H+L       P LL
Sbjct: 129 FSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFLFSLSHLLSLAILFLPLLL 188

Query: 320 SIFRSL 303
            +F +L
Sbjct: 189 RVFSTL 194


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
 Frame = -1

Query: 473 SIFKVLNFFCIIYTSFFPYLQYSMQGMLCFRFHSS-----FGHMLK*FYKNFPKLLSIFR 309
           SIF       I+ +  F + QYS+ G++  +F +S     F   L  +Y  +    S+ R
Sbjct: 355 SIFMASMSVIIVVSEVFLHTQYSLVGIILQKFTNSSATSIFVSFLFVYYMRYCTYKSLMR 414

Query: 308 SLFLTVLYYII 276
           + F    YY +
Sbjct: 415 TQFAPHYYYAL 425


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +3

Query: 96  FTENALVRKLQDLNSSQQSIQTLSLWLIHHRKHHAAVVKTW 218
           F   A  RK  D    Q   +  S WL+  R  H  VVK++
Sbjct: 477 FAVKAYRRKADDETDGQYIAKLASEWLVQCRMEHPNVVKSY 517


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 475 IASLKSLIFSASYTPLSSHIFNI 407
           +A+L S+     Y+P S HIF I
Sbjct: 491 VANLSSMFLDIKYSPSSEHIFEI 513


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +1

Query: 253 NSHSCILLMM*YKTVRKRDL 312
           N++SC++L +  KTV+K DL
Sbjct: 212 NTNSCVILDLDLKTVKKEDL 231


>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 349 DSTRTSPNSFPYSGPFFLLFCITSLARYMNV 257
           D  R  P S+P +  F + F +TS A + NV
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVTSPASFENV 93


>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
 Frame = +3

Query: 324 EFGEVLVESFQHMAKTGMES------KTKHSLHRILKIWEERGV--YDAEKIKDFKDAIA 479
           E+ E   E + H+   G         K + ++H IL+ W +RGV  +  + I        
Sbjct: 163 EWDEATQEYYLHLWSVGQPDLNWETPKVREAVHDILRFWLDRGVDGFRLDAINMISKDQR 222

Query: 480 GIEAPVTPSK 509
            ++AP+T  +
Sbjct: 223 FLDAPITDDR 232


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
 Frame = -2

Query: 490 ASMPAIASLKSLIFSASYTPLSSHIFNIL--CKE--------CFVLDSIPVLAIC*NDST 341
           +S+P++ASL   + S S +P S+ ++ I   C++        C V D   +   C  D++
Sbjct: 108 SSIPSVASLTCSVNSMSVSPQSNFMYAICDHCEQPIHNVRYKCSVCDDYDICESCLTDNS 167

Query: 340 RTSPNSF 320
            ++ ++F
Sbjct: 168 HSNTHAF 174


>SPAC1296.04 |mug65||spore wall assembly protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 108 ALVRKLQDLNSSQQSIQTLSLWLIHHRKHHAAVVKTWLKELLK 236
           AL+R LQD    ++ ++ L+ +L          VK   K+LLK
Sbjct: 167 ALLRALQDSRIDREKLEALATFLASASIDEKVYVKNCKKDLLK 209


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +3

Query: 405 RILKIWEERGVYDAEKIKD----FKDAIAGIEAPVTPSKVSKRKSTDTE 539
           ++  IWE+   +  EK++      KDA+A  E     S  +  +ST+ E
Sbjct: 124 KLCDIWEKASTFPPEKLESLRSKLKDAMASTEPVSVDSAAAPSQSTNPE 172


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -2

Query: 487 SMPAIASLKSLIFSASYTPLSSHIFNILCK-ECFVLDSIPVLAIC*NDSTRTSPNSFPYS 311
           ++P+ + L S   +++ TP   +  N+LC     V DS P L      +T  SP+SF  S
Sbjct: 35  AIPSSSPLASSTKASTSTPFVENCSNLLCDLASIVEDSPPTLT-----NTSLSPHSFSLS 89


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 17/68 (25%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
 Frame = -1

Query: 464 KVLNFFCIIYTSFFPYLQYSMQGMLCFRFHSSFGHMLK*FYKNFPK--LLSIFRSLFLTV 291
           KV+  FC    SFF YL +   G+  +R  + + +  K  ++++P+  +  +F++ +L  
Sbjct: 150 KVIIRFCEQGYSFFYYLCFWFLGLYIYRSSNYWSNEEK-LFEDYPQYYMSPLFKAYYLIQ 208

Query: 290 LYYIISKI 267
           L + + +I
Sbjct: 209 LGFWLQQI 216


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 372  GMESKTKHSLHRILKIWEERGVYDAEKIKDFKDAIAGIEAPVT 500
            G +    H+ H I+ I  E+    AEK KD    +AGIE  +T
Sbjct: 1304 GYQGVDMHTYHNIICILIEK----AEKCKDEPVILAGIEDNIT 1342


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
 Frame = +3

Query: 291 NSKKKGPEYGKEFGEVLVESFQHM--AKTGME-SKTKHSLHRILKIWEERGVYDAEKIKD 461
           N  +K   +G +  +  V+ F H   A+   E S+ K + +   K  +E+G+   E++  
Sbjct: 38  NLYQKLVSFGMDGDDPAVKEFAHTLYARIPREGSRPKENYNARKK--KEQGILQMERLNS 95

Query: 462 FKDAIAGIEAPVTPSKVSKRKS 527
             D +   ++  TP K  K+KS
Sbjct: 96  SYDLLIEPQSHETPGKPLKKKS 117


>SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 101

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 264 MYLANDVIQNSKKKGPEYGKEFGEVLVESFQHMAKTGMESKTKHSLHRI 410
           M+L   ++ N K K PE  +       +S Q  A   M+ + +H +H++
Sbjct: 40  MFLVEKLLSNRKTKNPESDRRRQSRKKKSTQIQASDEMKHR-RHHVHKV 87


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -1

Query: 476  NSIFK-VLNFFCIIYTSFFPYLQYSMQGMLCF 384
            N++F  +L+F+ +IY +  PYL +++ G+  F
Sbjct: 1073 NNVFLFLLSFYSLIYGAEKPYLIHNVVGLYFF 1104


>SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 21/63 (33%), Positives = 26/63 (41%)
 Frame = +3

Query: 330 GEVLVESFQHMAKTGMESKTKHSLHRILKIWEERGVYDAEKIKDFKDAIAGIEAPVTPSK 509
           G+   E     A+ GM+ K KH    I     E G   A+K K+ K    G   PVT S 
Sbjct: 183 GKKETEKMPMAARRGMKKKQKHIEKVIENEARESGTVLAKKRKERKQFKKGFR-PVTFSA 241

Query: 510 VSK 518
             K
Sbjct: 242 PGK 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,454
Number of Sequences: 5004
Number of extensions: 43274
Number of successful extensions: 128
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)