Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11e19
         (545 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)             148   3e-36
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)                 118   3e-27
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)                 37   0.012
SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.029
SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.1  
SB_48151| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_45653| Best HMM Match : zf-GRF (HMM E-Value=5.3e-16)                29   1.9  
SB_6561| Best HMM Match : HEAT (HMM E-Value=0.028)                     29   2.5  
SB_25972| Best HMM Match : MIF4G (HMM E-Value=4.9e-40)                 29   3.3  
SB_12498| Best HMM Match : TPR_1 (HMM E-Value=0)                       29   3.3  
SB_4059| Best HMM Match : Vicilin_N (HMM E-Value=0.83)                 28   5.7  
SB_52389| Best HMM Match : NACHT (HMM E-Value=2.1e-09)                 27   7.6  
SB_10432| Best HMM Match : OmpH (HMM E-Value=5.2)                      27   7.6  
SB_27462| Best HMM Match : Transposase_31 (HMM E-Value=8.5)            27   7.6  

>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score =  148 bits (358), Expect = 3e-36
 Identities = 73/153 (47%), Positives = 100/153 (65%)
 Frame = +3

Query: 87  MAGFTENALVRKLQDLNSSQQSIQTLSLWLIHHRKHHAAVVKTWLKELLKAKDSKQLTFM 266
           M  F+ + L +KL DL+++QQS+QTLSLWLIHHRKH   VV+ W KE+ K K SK+LTFM
Sbjct: 1   MTSFSASTLEKKLHDLSNTQQSVQTLSLWLIHHRKHAKTVVQVWNKEIRKVKTSKRLTFM 60

Query: 267 YLANDVIQNSKKKGPEYGKEFGEVLVESFQHMAKTGMESKTKHSLHRILKIWEERGVYDA 446
           YLANDV+QNSKKKG EY  EF   +  +F+ + + G +  T   L R+L IW ERGV++ 
Sbjct: 61  YLANDVLQNSKKKGNEYNLEFKAAMPSAFKFVGQGG-DKDTAKGLERLLNIWSERGVFEL 119

Query: 447 EKIKDFKDAIAGIEAPVTPSKVSKRKSTDTELK 545
             I+  +  +A I +PV     SK+   + + K
Sbjct: 120 SFIEKIRKGLA-IGSPVESPPPSKKSRIEDDSK 151


>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
          Length = 687

 Score =  118 bits (284), Expect = 3e-27
 Identities = 57/153 (37%), Positives = 93/153 (60%), Gaps = 2/153 (1%)
 Frame = +3

Query: 87  MAGFTENALVRKLQDLNSSQQSIQTLSLWLIHHRKHHAAVVKTWLKELLKAKDSKQLTFM 266
           MA F   + +RKLQ+++S+Q S+QTLSLW+IHH++    +VK W+ +L K    ++L   
Sbjct: 1   MAAFNPKSFLRKLQNMSSAQDSVQTLSLWIIHHKRSANDIVKVWIDQLKKCNTDRRLILF 60

Query: 267 YLANDVIQNSKKKGPEYGKEFGEVLVESFQHMAKTGMESKTKHSLHRILKIWEERGVYDA 446
           YLANDV+QNS+KKG E+   F  VL E+   ++    +   K ++ R+L+IW++R V++ 
Sbjct: 61  YLANDVLQNSRKKGKEFSSAFARVLREAVPLLS----DKSIKDAVKRVLQIWQDRKVFEV 116

Query: 447 EKIKDFKDAI--AGIEAPVTPSKVSKRKSTDTE 539
           E I D +  +  +       PSK  ++K  + E
Sbjct: 117 EFIDDLRGKLDKSNSSNHSQPSKSVRKKEKEKE 149


>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
          Length = 1463

 Score = 36.7 bits (81), Expect = 0.012
 Identities = 18/80 (22%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
 Frame = +3

Query: 231 LKAKDSKQLTFMYLANDVIQNSKKK-GPE---YGKEFGEVLVESFQHMAKTGMESKTKHS 398
           +K +   ++  +Y+ + +I+ S+ + GP+   +G  F + +  +FQH+ K   E + +  
Sbjct: 40  IKCRQEYKVPALYIMDSIIRQSRHQFGPDKDVFGPRFLKSIHPTFQHIYKCPPEEQGR-- 97

Query: 399 LHRILKIWEERGVYDAEKIK 458
           + ++L +W++ G++  E I+
Sbjct: 98  IVKVLNLWQKNGIFPPEVIQ 117


>SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 35.5 bits (78), Expect = 0.029
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
 Frame = +3

Query: 252 QLTFMYLANDVIQNSKKKG-PEYGKEFGEVLVESFQHMAKTGMESKTKHSLHRILKIWEE 428
           +L  +Y+ ND++ ++ +K   +      EV+V  F + A+ G   +    L ++L IWE 
Sbjct: 15  KLHLVYIINDIVHHAARKNLTDLNSAVKEVVVPVFCY-ARQGDIGEGMQKLTKVLGIWET 73

Query: 429 RGVYDA---EKIKDFKDAIAGIE 488
              +DA   +K+K+ + A A +E
Sbjct: 74  NDFFDAATLQKLKNPESAKAEVE 96


>SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1283

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
 Frame = +3

Query: 123 LQDLN-SSQQSIQTLSLWLIHHRKHHAAVVKTWLKELLKAKDSKQLTFMYLANDVIQNSK 299
           L DL  +S+  I  L++    + ++ A++VK   K +       +L  +YL + +I+N  
Sbjct: 56  LADLTFNSKPLINVLTMLAEENGQYAASIVKLIEKRIQTVAQQYRLPSLYLLDSIIKN-- 113

Query: 300 KKGPEYGKEFGEVLVESFQHMAKTGMESKTKHSLHRILKIWEE 428
             G +Y     + LV  F  +   G + K +  L+++   W +
Sbjct: 114 -VGGDYLMLIAQSLVSVFVAVFAKG-DEKVRKDLYKLRNTWPQ 154


>SB_48151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = +3

Query: 279 DVIQNSKKKGPEYGKEFGEVLVESFQHMAKTGMESKTKHSLHRILKIWEERGVYDAEKIK 458
           D   N+K++  +  + F  +   + QH  +T +E  +  S   +LKIW E+ ++  EKI 
Sbjct: 32  DERSNNKRRAAKRQRNFRRI---NTQH--RTSLEVYSFTSSWILLKIWLEKNIHFVEKIS 86

Query: 459 DFKD 470
           D  D
Sbjct: 87  DTND 90


>SB_45653| Best HMM Match : zf-GRF (HMM E-Value=5.3e-16)
          Length = 470

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 207 VKTWLKELLKAKDSKQLTFMYLANDVIQNSKKKGPEYGKEF 329
           V  W K +LK      L   +    V++  KKKGP YG++F
Sbjct: 407 VSAW-KSILKGPPPAPLCPGHNEPSVLRTVKKKGPNYGRQF 446


>SB_6561| Best HMM Match : HEAT (HMM E-Value=0.028)
          Length = 1444

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
 Frame = +3

Query: 102 ENALVRKLQDLNSSQQSIQTLSLWLIHHRKHHAAVVKTWLKELLKAKD---SKQLTFMYL 272
           ++A+V KLQ +  ++  ++      + HR          +K++L   D   SKQL  + L
Sbjct: 14  KHAVVTKLQGMFCNKCQLEYCRKLSLGHRVVLLRAASAIIKDVLPDLDLEVSKQL--IKL 71

Query: 273 ANDVIQNSKKKGPEYGKEFGEVLV 344
           A+D +  SK+  PE+     EVLV
Sbjct: 72  ASDELTKSKEIEPEWQTAASEVLV 95


>SB_25972| Best HMM Match : MIF4G (HMM E-Value=4.9e-40)
          Length = 1265

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +3

Query: 192  HHAAVVKTWLKEL-LKAKDSKQLTFMYLANDVIQNSKKKGPEYGKEFGEVLVES 350
            HH+A V+  L+EL LK K S Q  F ++  +V QN+  K P++ +    V+ ES
Sbjct: 1102 HHSANVQEELRELMLKKKASNQEVFNWIDGNV-QNT--KDPQFIRAIVTVVCES 1152


>SB_12498| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 495

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 20/68 (29%), Positives = 32/68 (47%)
 Frame = +3

Query: 315 YGKEFGEVLVESFQHMAKTGMESKTKHSLHRILKIWEERGVYDAEKIKDFKDAIAGIEAP 494
           Y +E  E   ++ Q   +TG ESK     H I  + +  G Y+ E +K ++ A+   E  
Sbjct: 36  YYEEAMEYYQQALQVFERTGNESKQADVRHNIGVVQQSLGNYE-EAMKYYQQALQVFERT 94

Query: 495 VTPSKVSK 518
              SK +K
Sbjct: 95  GNESKQAK 102


>SB_4059| Best HMM Match : Vicilin_N (HMM E-Value=0.83)
          Length = 257

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 439 MMQKKLRTLKMLLLASKHPSLRAKLANVNRLIQNL 543
           M  K+  + K ++ A KHP  +  L NVN L + L
Sbjct: 17  MATKRQISQKRIITAQKHPQTKRALQNVNPLTKEL 51


>SB_52389| Best HMM Match : NACHT (HMM E-Value=2.1e-09)
          Length = 818

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 396 SLHRILKIWEERGVYDAEKIKDFKDAIAGIEAPVTPSKVSKRKSTDTELK 545
           S  ++LK W ++ +  AEKI+  K+ I       T   VSK    +T LK
Sbjct: 107 SYGKLLKEWWKQDIDIAEKIEGAKEEIISTSEKNTEKIVSKVIEVETGLK 156


>SB_10432| Best HMM Match : OmpH (HMM E-Value=5.2)
          Length = 393

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 396 SLHRILKIWEERGVYDAEKIKDFKDAIAGIEAPVTPSKVSKRKSTDTELK 545
           S  ++LK W ++ +  AEKI+  K+ I       T   VSK    +T LK
Sbjct: 179 SYGKLLKEWWKQDIDIAEKIEGAKEEIISTSEKNTEKIVSKVIEVETGLK 228


>SB_27462| Best HMM Match : Transposase_31 (HMM E-Value=8.5)
          Length = 250

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 396 SLHRILKIWEERGVYDAEKIKDFKDAIAGIEAPVTPSKVSKRKSTDTELK 545
           S  ++LK W ++ +  AEKI+  K+ I       T   VSK    +T LK
Sbjct: 179 SYGKLLKEWWKQDIDIAEKIEGAKEEIISTSEKNTEKIVSKVIEVETGLK 228


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,192,644
Number of Sequences: 59808
Number of extensions: 293542
Number of successful extensions: 750
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)