Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11e19
(545 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g10060.1 68418.m01165 expressed protein 110 5e-25
At5g65180.1 68418.m08198 expressed protein contains Pfam domain,... 107 5e-24
At3g26990.1 68416.m03377 expressed protein contains Pfam domain,... 97 5e-21
At4g31200.3 68417.m04431 SWAP (Suppressor-of-White-APricot)/surp... 40 8e-04
At4g31200.2 68417.m04430 SWAP (Suppressor-of-White-APricot)/surp... 40 8e-04
At4g31200.1 68417.m04429 SWAP (Suppressor-of-White-APricot)/surp... 40 8e-04
At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH... 33 0.094
At4g04885.1 68417.m00711 pre-mRNA cleavage complex-related conta... 30 0.88
At5g16730.1 68418.m01959 expressed protein weak similarity to mi... 30 1.2
At3g23160.1 68416.m02919 expressed protein contains Pfam domain ... 29 2.0
At3g48200.1 68416.m05259 expressed protein 28 3.5
At5g23150.1 68418.m02707 PWWP domain-containing protein identica... 28 4.7
At5g09600.1 68418.m01111 succinate dehydrogenase cytochrome b su... 28 4.7
At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DN... 28 4.7
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote... 27 6.2
>At5g10060.1 68418.m01165 expressed protein
Length = 469
Score = 110 bits (265), Expect = 5e-25
Identities = 55/143 (38%), Positives = 90/143 (62%)
Frame = +3
Query: 96 FTENALVRKLQDLNSSQQSIQTLSLWLIHHRKHHAAVVKTWLKELLKAKDSKQLTFMYLA 275
F++ L+ KL LNSSQQSI+TLS W I +R +V TW K+ + +++ +YLA
Sbjct: 5 FSDQILIDKLAKLNSSQQSIETLSHWCIFNRSKAELIVTTWEKQFHSTEMDQKVPLLYLA 64
Query: 276 NDVIQNSKKKGPEYGKEFGEVLVESFQHMAKTGMESKTKHSLHRILKIWEERGVYDAEKI 455
ND++QNSK++G E+ +EF VL ++ + + G + K ++ R++KIWEER V+ +
Sbjct: 65 NDILQNSKRQGNEFVQEFWNVLPKALKDIVSQG-DDNGKSAVARVIKIWEERRVF-GSRS 122
Query: 456 KDFKDAIAGIEAPVTPSKVSKRK 524
K KD + G + P+ P +SK++
Sbjct: 123 KSLKDVMLGEDVPL-PLDISKKR 144
>At5g65180.1 68418.m08198 expressed protein contains Pfam domain,
PF04818: Protein of unknown function, DUF618
Length = 439
Score = 107 bits (257), Expect = 5e-24
Identities = 58/143 (40%), Positives = 86/143 (60%)
Frame = +3
Query: 96 FTENALVRKLQDLNSSQQSIQTLSLWLIHHRKHHAAVVKTWLKELLKAKDSKQLTFMYLA 275
F+E L+ L LNS+QQSIQTLS W I HR VV TW K+ + +++ +YLA
Sbjct: 5 FSEEILIDNLAKLNSTQQSIQTLSQWCIVHRSEAELVVTTWEKQFHSTQIGQKVPLLYLA 64
Query: 276 NDVIQNSKKKGPEYGKEFGEVLVESFQHMAKTGMESKTKHSLHRILKIWEERGVYDAEKI 455
ND++QNSK++G E+ +EF +VL + + + G + K + R++ IWEER V+ +
Sbjct: 65 NDILQNSKRQGNEFVQEFWKVLPGALKDIVSLG-DDYGKGVVSRLVNIWEERRVF-GSRS 122
Query: 456 KDFKDAIAGIEAPVTPSKVSKRK 524
K KD + EAP P VSK++
Sbjct: 123 KSLKDVMLSEEAP-PPLDVSKKR 144
>At3g26990.1 68416.m03377 expressed protein contains Pfam domain,
PF04818: Protein of unknown function, DUF618
Length = 513
Score = 97.5 bits (232), Expect = 5e-21
Identities = 49/117 (41%), Positives = 73/117 (62%)
Frame = +3
Query: 90 AGFTENALVRKLQDLNSSQQSIQTLSLWLIHHRKHHAAVVKTWLKELLKAKDSKQLTFMY 269
+ F LV KL LN+SQ SI+TLS W I H VV+TW ++ A ++L ++Y
Sbjct: 3 SSFNAQILVEKLAKLNNSQASIETLSHWCIFHMNKAKHVVETWGRQFHCAPREQRLAYLY 62
Query: 270 LANDVIQNSKKKGPEYGKEFGEVLVESFQHMAKTGMESKTKHSLHRILKIWEERGVY 440
LAND++QNS++KG E+ EF +VL ++ + M + G + K S R++ IWEER V+
Sbjct: 63 LANDILQNSRRKGSEFVGEFWKVLPDALRDMIENGDDFGRK-SARRLVNIWEERKVF 118
>At4g31200.3 68417.m04431 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein related to DAN26 [Homo
sapiens] gi|1770394|emb|CAA69591
Length = 650
Score = 40.3 bits (90), Expect = 8e-04
Identities = 29/125 (23%), Positives = 62/125 (49%), Gaps = 10/125 (8%)
Frame = +3
Query: 123 LQDLNSSQQSIQTLSLWLIHHRKHHAAVVKTWLKELLKAKDS-KQLTFMYLANDVIQNSK 299
L +LN +++SI++ +W + A+ + + DS +Q+ +YLAND++ +S
Sbjct: 279 LGNLNGTKESIKSAKIWFMQRSPFAPALAEALRDRVFAMDDSDRQMHIVYLANDILFDSL 338
Query: 300 KKGP---EYGKE---FGEVL---VESFQHMAKTGMESKTKHSLHRILKIWEERGVYDAEK 452
++ E+ E F +L + H + E++++ L +IL+ W + V+D +
Sbjct: 339 QRRTNLHEFDNEALAFRPILGSMLGRIYHFPQNKEENQSR--LEKILQFWASKEVFDQDT 396
Query: 453 IKDFK 467
I +
Sbjct: 397 ISSLE 401
>At4g31200.2 68417.m04430 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein related to DAN26 [Homo
sapiens] gi|1770394|emb|CAA69591
Length = 650
Score = 40.3 bits (90), Expect = 8e-04
Identities = 29/125 (23%), Positives = 62/125 (49%), Gaps = 10/125 (8%)
Frame = +3
Query: 123 LQDLNSSQQSIQTLSLWLIHHRKHHAAVVKTWLKELLKAKDS-KQLTFMYLANDVIQNSK 299
L +LN +++SI++ +W + A+ + + DS +Q+ +YLAND++ +S
Sbjct: 279 LGNLNGTKESIKSAKIWFMQRSPFAPALAEALRDRVFAMDDSDRQMHIVYLANDILFDSL 338
Query: 300 KKGP---EYGKE---FGEVL---VESFQHMAKTGMESKTKHSLHRILKIWEERGVYDAEK 452
++ E+ E F +L + H + E++++ L +IL+ W + V+D +
Sbjct: 339 QRRTNLHEFDNEALAFRPILGSMLGRIYHFPQNKEENQSR--LEKILQFWASKEVFDQDT 396
Query: 453 IKDFK 467
I +
Sbjct: 397 ISSLE 401
>At4g31200.1 68417.m04429 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein related to DAN26 [Homo
sapiens] gi|1770394|emb|CAA69591
Length = 650
Score = 40.3 bits (90), Expect = 8e-04
Identities = 29/125 (23%), Positives = 62/125 (49%), Gaps = 10/125 (8%)
Frame = +3
Query: 123 LQDLNSSQQSIQTLSLWLIHHRKHHAAVVKTWLKELLKAKDS-KQLTFMYLANDVIQNSK 299
L +LN +++SI++ +W + A+ + + DS +Q+ +YLAND++ +S
Sbjct: 279 LGNLNGTKESIKSAKIWFMQRSPFAPALAEALRDRVFAMDDSDRQMHIVYLANDILFDSL 338
Query: 300 KKGP---EYGKE---FGEVL---VESFQHMAKTGMESKTKHSLHRILKIWEERGVYDAEK 452
++ E+ E F +L + H + E++++ L +IL+ W + V+D +
Sbjct: 339 QRRTNLHEFDNEALAFRPILGSMLGRIYHFPQNKEENQSR--LEKILQFWASKEVFDQDT 396
Query: 453 IKDFK 467
I +
Sbjct: 397 ISSLE 401
>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
(MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
thaliana}
Length = 1324
Score = 33.5 bits (73), Expect = 0.094
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +3
Query: 405 RILKIWEERGVYDAEKIKDFKDAIAGIEAPVTPSKVSKRKS 527
R+LK W R +Y+ E IK+ +DA+A + P + RKS
Sbjct: 735 RLLKTWLARPLYNTELIKERQDAVAILRGENLPYSLEFRKS 775
>At4g04885.1 68417.m00711 pre-mRNA cleavage complex-related contains
weak similarity to Pre-mRNA cleavage complex II protein
Pcf11 (Fragment) (Swiss-Prot:O94913) [Homo sapiens]
Length = 808
Score = 30.3 bits (65), Expect = 0.88
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = +3
Query: 138 SSQQSIQTLSLWLIHHRKHHAAVVKTWLKELLKAKDSKQLTFMYLANDVIQNSKKKGPEY 317
+S+ I L++ R+H + +L+A ++L +YL + +++N G +Y
Sbjct: 79 NSKPIITDLTIIAGEQREHGEGIANAICTRILEAPVEQKLPSLYLLDSIVKNI---GRDY 135
Query: 318 GKEFGEVLVESF 353
G+ F L E F
Sbjct: 136 GRYFSSRLPEVF 147
>At5g16730.1 68418.m01959 expressed protein weak similarity to
microtubule binding protein D-CLIP-190 [Drosophila
melanogaster] GI:2773363, SMC2-like condensin
[Arabidopsis thaliana] GI:14279543
Length = 853
Score = 29.9 bits (64), Expect = 1.2
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Frame = +3
Query: 291 NSKKKGPEYGKEFGEVLVESFQHMAKTGMESKTKH-SLHRILKIWEERGVYDAEKIKDFK 467
NS G E + G+ VE+ + K + K S+ I K+WE + E D K
Sbjct: 726 NSNGNGMEEKEVNGKPEVETEKKEKKDESQDDDKDDSVEVIFKMWESCQIEKKEAFPDKK 785
Query: 468 DAIAGIEAPVTPSKVSKRKSTDTE 539
+ E SK+ + T TE
Sbjct: 786 SELESQEEEEDSSKIDESDKTSTE 809
>At3g23160.1 68416.m02919 expressed protein contains Pfam domain
PF05003: protein of unknown function (DUF668);
expression supported by MPSS
Length = 522
Score = 29.1 bits (62), Expect = 2.0
Identities = 24/80 (30%), Positives = 36/80 (45%)
Frame = +3
Query: 264 MYLANDVIQNSKKKGPEYGKEFGEVLVESFQHMAKTGMESKTKHSLHRILKIWEERGVYD 443
++ AN VI K +Y GE + M T +++ K SL LK +YD
Sbjct: 359 LHYANVVIVVEKLL--KYPHLIGEEARDDLYQMLPTSLKTTLKASLRSYLK---NISIYD 413
Query: 444 AEKIKDFKDAIAGIEAPVTP 503
A D+K+ I GI + + P
Sbjct: 414 APLAHDWKETIDGILSWLAP 433
>At3g48200.1 68416.m05259 expressed protein
Length = 1088
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -1
Query: 443 IIYTSFFPYLQYSMQGMLCFRFHSSFGHMLK*FYKNFPKLLSIFRSLFLTVLYY 282
++ TS+ L + + LCFRFH +G L + P S F S + L +
Sbjct: 3 LLKTSWLLLLFWVVSSPLCFRFHYCYGSELSVKFLKAPPTTSRFTSAKFSFLAF 56
>At5g23150.1 68418.m02707 PWWP domain-containing protein identical to
cDNA putative transcription factor (HUA2) GI:4868119;
contains Pfam profile PF00855: PWWP domain
Length = 1392
Score = 27.9 bits (59), Expect = 4.7
Identities = 30/139 (21%), Positives = 61/139 (43%), Gaps = 8/139 (5%)
Frame = +3
Query: 84 TMAGFTENALVRKLQDLNSSQQSIQTLSLWLIHHRKHHAA--VVKTWLKEL-LKAKDSKQ 254
T A + +A L+ L+ +++SI + I K+ A VV+ +++L ++ ++
Sbjct: 770 TEAAISRDAFEGMLETLSRTRESIGRATRLAIDCAKYGLASEVVELLIRKLESESHFHRK 829
Query: 255 LTFMYLANDVIQNSKKK----GPEYGKEFGEVLVESFQHMAKTGM-ESKTKHSLHRILKI 419
+ +L + + Q+S + G Y L A G S + ++LK+
Sbjct: 830 VDLFFLVDSITQHSHSQKGIAGASYVPTVQAALPRLLGAAAPPGTGASDNRRKCLKVLKL 889
Query: 420 WEERGVYDAEKIKDFKDAI 476
W ER V+ ++ + D I
Sbjct: 890 WLERKVFPESLLRRYIDDI 908
>At5g09600.1 68418.m01111 succinate dehydrogenase cytochrome b
subunit family protein similar to succinate
dehydrogenase subunit 3 [Gossypium hirsutum]
GI:14861484; contains Pfam profile PF01127: Succinate
dehydrogenase cytochrome b subunit
Length = 213
Score = 27.9 bits (59), Expect = 4.7
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Frame = -1
Query: 476 NSIFKVLNFFCIIY---TSFFPYLQYSMQGMLCFRFHSSFGHMLK*FYKNFPKLLSIFRS 306
NS+ + N +Y +F YL Y GM+C + SF +L + P + S+
Sbjct: 139 NSMLSIFNRISGVYLTGVTFAGYLLYLKMGMICLTY-PSFYQVLYHTQQQLPVITSV--- 194
Query: 305 LFLTVLYYIISKIH 264
L +Y+ I H
Sbjct: 195 TALAAIYHTIKSTH 208
>At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DNA
topoisomerase II / DNA gyrase (TOP2) identical to
SP|P30182 DNA topoisomerase II (EC 5.99.1.3) {Arabidopsis
thaliana}
Length = 1473
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 180 HHRKHHAAVVKTWLKELLKAKDSKQLTFMYLANDVIQNSKKK 305
++ K VVK ELLK ++ + L+ ++I N +KK
Sbjct: 1019 YYEKRKETVVKNMEIELLKLENKARFILAVLSGEIIVNKRKK 1060
>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
beta-ketoacyl-CoA synthase - Simmondsia
chinensis,PID:g1045614
Length = 451
Score = 27.5 bits (58), Expect = 6.2
Identities = 19/68 (27%), Positives = 32/68 (47%)
Frame = +3
Query: 225 ELLKAKDSKQLTFMYLANDVIQNSKKKGPEYGKEFGEVLVESFQHMAKTGMESKTKHSLH 404
EL + +D KQ +Y++ DV++ + G L SF+H+ K +H
Sbjct: 315 ELREDRDGKQ--GLYVSRDVMEVGRHALKANIATLGR-LEPSFEHICVLASSKKVLDDIH 371
Query: 405 RILKIWEE 428
+ LK+ EE
Sbjct: 372 KDLKLTEE 379
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,755,890
Number of Sequences: 28952
Number of extensions: 212168
Number of successful extensions: 658
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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