Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11e17
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    32   0.049
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac...    25   5.7  

>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 32.3 bits (70), Expect = 0.049
 Identities = 14/26 (53%), Positives = 20/26 (76%)
 Frame = +3

Query: 81  LDQQITKQGDLVRSLKTSKAEKSKID 158
           ++++IT QG+LVRSLK+  A K  ID
Sbjct: 8   INERITSQGNLVRSLKSQGASKEDID 33



 Score = 31.9 bits (69), Expect = 0.065
 Identities = 14/35 (40%), Positives = 24/35 (68%)
 Frame = +3

Query: 264 SNDVTALDRDVTAQGDLVRSLKASKADKAKIDEAV 368
           ++ +  ++  +T+QG+LVRSLK+  A K  ID+ V
Sbjct: 2   ADSLVDINERITSQGNLVRSLKSQGASKEDIDKEV 36


>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
           Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 167

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
 Frame = +1

Query: 205 PP--DKIGSQDPRLQQWPPPHRPMT---SPLSIVTSPRRET 312
           PP  DK G +D   ++W P H P T   S +S+++SP  E+
Sbjct: 96  PPGDDKYGYEDAG-ERWLPVHSPETILISVISMLSSPNDES 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,465,621
Number of Sequences: 5004
Number of extensions: 20211
Number of successful extensions: 61
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)