BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov11e17 (555 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_05_0246 + 19880364-19880565,19880721-19880801,19880891-198810... 32 0.35 01_04_0038 - 15339047-15339230,15339683-15339741,15340031-153401... 28 5.8 08_02_0839 + 21693348-21694853 27 7.6 07_03_0471 + 18501496-18502104,18503009-18503260,18503367-185035... 27 7.6 02_05_1277 - 35408097-35409080 27 7.6 >01_05_0246 + 19880364-19880565,19880721-19880801,19880891-19881054, 19881784-19881835,19882110-19882462 Length = 283 Score = 31.9 bits (69), Expect = 0.35 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%) Frame = +1 Query: 172 HCWNSKPNTRLPPDKIGSQDPRLQQWPPPHRPMTSP--LSIVTSPRRETWCAR 324 HC + R P G+ + + WPP + P L ++S R WC R Sbjct: 151 HCAQAARQWRAPASSAGTTNGQPDVWPPMPNCLNQPNELPFISSKARMAWCYR 203 >01_04_0038 - 15339047-15339230,15339683-15339741,15340031-15340160, 15340248-15340498,15340632-15341225,15342050-15342511 Length = 559 Score = 27.9 bits (59), Expect = 5.8 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +3 Query: 267 NDVTALDRDVTAQGDLVRSLKASKADKAKIDEAV 368 +D+ A V +GD V LKA+KA K +I AV Sbjct: 223 SDIEAARVVVKEKGDAVAQLKAAKASKQEITAAV 256 >08_02_0839 + 21693348-21694853 Length = 501 Score = 27.5 bits (58), Expect = 7.6 Identities = 16/36 (44%), Positives = 19/36 (52%) Frame = +1 Query: 190 PNTRLPPDKIGSQDPRLQQWPPPHRPMTSPLSIVTS 297 P LPP Q P LQ PPP P +SP+S T+ Sbjct: 24 PLPYLPPPPPPPQPPLLQLQPPP--PPSSPVSFDTA 57 >07_03_0471 + 18501496-18502104,18503009-18503260,18503367-18503537, 18503693-18503743,18503868-18503960,18504125-18504220, 18504318-18504368,18504452-18504570,18504909-18505017, 18505391-18505513,18505590-18505661,18505963-18506034, 18506125-18506191,18506260-18506402,18506494-18506565, 18506632-18506760,18507317-18507472,18507579-18507692, 18507791-18507889,18507974-18508051,18508402-18508536, 18509081-18509155,18509247-18509361,18509458-18509828, 18509903-18509965,18510049-18510120,18510285-18510413, 18510512-18510628,18510902-18511018 Length = 1289 Score = 27.5 bits (58), Expect = 7.6 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 2/30 (6%) Frame = +1 Query: 184 SKPNTRLP--PDKIGSQDPRLQQWPPPHRP 267 S P T P P GS P WPPP P Sbjct: 58 SAPPTSAPGVPGSAGSPSPSSSSWPPPPPP 87 >02_05_1277 - 35408097-35409080 Length = 327 Score = 27.5 bits (58), Expect = 7.6 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = +1 Query: 181 NSKPNTRLPPDKIGSQDPRLQQWPPPHRPMTSPLSIVTSPR 303 +SKP+T PP +Q P L P P P+ +V S R Sbjct: 54 DSKPSTPAPPPPPPAQPPVLAAPAPAPPPPQPPVVVVKSER 94 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,614,529 Number of Sequences: 37544 Number of extensions: 163812 Number of successful extensions: 544 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 520 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 538 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1257681096 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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