Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11e17
         (555 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0246 + 19880364-19880565,19880721-19880801,19880891-198810...    32   0.35 
01_04_0038 - 15339047-15339230,15339683-15339741,15340031-153401...    28   5.8  
08_02_0839 + 21693348-21694853                                         27   7.6  
07_03_0471 + 18501496-18502104,18503009-18503260,18503367-185035...    27   7.6  
02_05_1277 - 35408097-35409080                                         27   7.6  

>01_05_0246 +
           19880364-19880565,19880721-19880801,19880891-19881054,
           19881784-19881835,19882110-19882462
          Length = 283

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = +1

Query: 172 HCWNSKPNTRLPPDKIGSQDPRLQQWPPPHRPMTSP--LSIVTSPRRETWCAR 324
           HC  +    R P    G+ + +   WPP    +  P  L  ++S  R  WC R
Sbjct: 151 HCAQAARQWRAPASSAGTTNGQPDVWPPMPNCLNQPNELPFISSKARMAWCYR 203


>01_04_0038 -
           15339047-15339230,15339683-15339741,15340031-15340160,
           15340248-15340498,15340632-15341225,15342050-15342511
          Length = 559

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 267 NDVTALDRDVTAQGDLVRSLKASKADKAKIDEAV 368
           +D+ A    V  +GD V  LKA+KA K +I  AV
Sbjct: 223 SDIEAARVVVKEKGDAVAQLKAAKASKQEITAAV 256


>08_02_0839 + 21693348-21694853
          Length = 501

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +1

Query: 190 PNTRLPPDKIGSQDPRLQQWPPPHRPMTSPLSIVTS 297
           P   LPP     Q P LQ  PPP  P +SP+S  T+
Sbjct: 24  PLPYLPPPPPPPQPPLLQLQPPP--PPSSPVSFDTA 57


>07_03_0471 +
           18501496-18502104,18503009-18503260,18503367-18503537,
           18503693-18503743,18503868-18503960,18504125-18504220,
           18504318-18504368,18504452-18504570,18504909-18505017,
           18505391-18505513,18505590-18505661,18505963-18506034,
           18506125-18506191,18506260-18506402,18506494-18506565,
           18506632-18506760,18507317-18507472,18507579-18507692,
           18507791-18507889,18507974-18508051,18508402-18508536,
           18509081-18509155,18509247-18509361,18509458-18509828,
           18509903-18509965,18510049-18510120,18510285-18510413,
           18510512-18510628,18510902-18511018
          Length = 1289

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
 Frame = +1

Query: 184 SKPNTRLP--PDKIGSQDPRLQQWPPPHRP 267
           S P T  P  P   GS  P    WPPP  P
Sbjct: 58  SAPPTSAPGVPGSAGSPSPSSSSWPPPPPP 87


>02_05_1277 - 35408097-35409080
          Length = 327

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 181 NSKPNTRLPPDKIGSQDPRLQQWPPPHRPMTSPLSIVTSPR 303
           +SKP+T  PP    +Q P L    P   P   P+ +V S R
Sbjct: 54  DSKPSTPAPPPPPPAQPPVLAAPAPAPPPPQPPVVVVKSER 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,614,529
Number of Sequences: 37544
Number of extensions: 163812
Number of successful extensions: 544
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)