Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11e17
         (555 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50408| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_8676| Best HMM Match : Peptidase_M18 (HMM E-Value=0)                32   0.36 
SB_18484| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_41815| Best HMM Match : zf-CXXC (HMM E-Value=3.5e-17)               29   2.6  
SB_28889| Best HMM Match : ANF_receptor (HMM E-Value=1.1e-34)          28   4.5  
SB_18109| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_39247| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_20226| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_9709| Best HMM Match : WHEP-TRS (HMM E-Value=0.0041)                28   5.9  

>SB_50408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = +3

Query: 273 VTALDRDVTAQGDLVRSLKASKADKAKIDEAV 368
           + AL  +VT QG+ VRSLK +KA+KA ID  V
Sbjct: 484 IEALQAEVTQQGEKVRSLKTNKAEKAVIDAEV 515



 Score = 36.7 bits (81), Expect = 0.013
 Identities = 16/26 (61%), Positives = 22/26 (84%)
 Frame = +3

Query: 81  LDQQITKQGDLVRSLKTSKAEKSKID 158
           L  ++T+QG+ VRSLKT+KAEK+ ID
Sbjct: 487 LQAEVTQQGEKVRSLKTNKAEKAVID 512


>SB_8676| Best HMM Match : Peptidase_M18 (HMM E-Value=0)
          Length = 1161

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +3

Query: 90  QITKQGDLVRSLKTSKAEKSKIDXXXXXXXXXXXXXXXXTGQDWKPGS 233
           +IT+QGD VR+LKT  A+K  +D                TG D  PG+
Sbjct: 434 EITQQGDKVRTLKTGGADKGTVDAEVAVLLKLKADYKTMTGTD-VPGA 480



 Score = 31.1 bits (67), Expect = 0.63
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +3

Query: 273 VTALDRDVTAQGDLVRSLKASKADKAKIDEAV 368
           V  L  ++T QGD VR+LK   ADK  +D  V
Sbjct: 428 VEKLMGEITQQGDKVRTLKTGGADKGTVDAEV 459


>SB_18484| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 154 LTRLSRHCWNSKP-NTRLPPDKIGSQDPRLQQWPPPHRPMTSPLS 285
           + RL+R+C  S   + R+P +     DP + + PPP     SP S
Sbjct: 38  VARLARYCMRSPDAHCRVPSNSCSPGDPLVLERPPPRWSSNSPYS 82


>SB_41815| Best HMM Match : zf-CXXC (HMM E-Value=3.5e-17)
          Length = 906

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 181 NSKPNTRLPPDKI-GSQDPRLQQWPPPHRPMTSPLSIVTSPR 303
           +S+ N  LP D   G+Q  R ++ PP H P   P     SP+
Sbjct: 563 DSEDNESLPADSTTGTQSTRRRRDPPKHAPSPPPPPTEVSPK 604


>SB_28889| Best HMM Match : ANF_receptor (HMM E-Value=1.1e-34)
          Length = 933

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 142 KNRKLTRLSRHCWNSKPNTR 201
           +NR +T+L   CWN  P  R
Sbjct: 657 RNRSVTKLMTQCWNDDPQAR 676


>SB_18109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 59

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 142 KNRKLTRLSRHCWNSKPNTR 201
           +NR +T+L   CWN  P  R
Sbjct: 23  RNRSVTKLMTQCWNDDPQAR 42


>SB_39247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +1

Query: 145 NRKLTRLSRHCWNSKPNTRLPPDKIGSQDPRLQQWPPPHRPMTSPLS 285
           N+ +  L RH      N  L  +     DP + + PPP     SP S
Sbjct: 4   NKTVRHLGRHFTGHAKNDALSSNSCSPGDPLVLERPPPRWSSNSPYS 50


>SB_20226| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 282 LDRDVTAQGDLVRSLKASKADKAKIDEAV 368
           L + V  QGDLVR LK  KA +  ++ A+
Sbjct: 13  LRKSVKEQGDLVRKLKEDKAPENDVEIAI 41



 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 81  LDQQITKQGDLVRSLKTSKAEKSKID 158
           L + + +QGDLVR LK  KA ++ ++
Sbjct: 13  LRKSVKEQGDLVRKLKEDKAPENDVE 38


>SB_9709| Best HMM Match : WHEP-TRS (HMM E-Value=0.0041)
          Length = 83

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +3

Query: 93  ITKQGDLVRSLKTSKAEK 146
           IT+QGD VRSLKT  A K
Sbjct: 66  ITQQGDKVRSLKTQGAHK 83


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,704,909
Number of Sequences: 59808
Number of extensions: 184084
Number of successful extensions: 728
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)