Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11e17
(555 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75714-3|CAB00060.1| 1149|Caenorhabditis elegans Hypothetical pr... 38 0.005
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 34 0.079
U23178-4|AAK68300.1| 606|Caenorhabditis elegans Vh1 dual-specif... 30 0.97
AF003135-9|AAK18985.3| 1146|Caenorhabditis elegans Guanylyl cycl... 29 1.7
U23412-2|AAN65294.1| 678|Caenorhabditis elegans Glycyl trna syn... 29 3.0
U23412-1|AAK21465.2| 742|Caenorhabditis elegans Glycyl trna syn... 29 3.0
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 27 6.9
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 27 6.9
>Z75714-3|CAB00060.1| 1149|Caenorhabditis elegans Hypothetical protein
ZC434.5 protein.
Length = 1149
Score = 37.9 bits (84), Expect = 0.005
Identities = 40/165 (24%), Positives = 53/165 (32%), Gaps = 8/165 (4%)
Frame = +3
Query: 81 LDQQITKQGDLVRSLKTSKAEKSKIDXXXXXXXXXXXXXXXXTGQDWKPG----SXXXXX 248
L I +QG +VR LKT A+ TG D KPG +
Sbjct: 733 LYNSIEQQGGIVRDLKTKDAKSQATKDAIAKLLDLKKKYKELTGSDHKPGAPPSAPAPTT 792
Query: 249 XXXXXSNDVTALDRDVTAQGDLVRSLKASKADKAKIDEAVXXXXXXXXXXXXXXGQDW-- 422
SN + + AQG LVR LK A +A+ G D
Sbjct: 793 PSSSESNSALNIYNLIEAQGLLVRELKGKDAKSQATKDAIAKLLELKKQYKEVSGSDHKP 852
Query: 423 --XXXXXXXXXXXXXXXXXXXNVAELASQIEAQGDKVRRIKSEKA 551
N ++ QIE+QG VR +K + A
Sbjct: 853 GVPPAASVASAPAPAPAAGSTNALDIYHQIESQGALVRELKGKDA 897
Score = 34.7 bits (76), Expect = 0.045
Identities = 40/158 (25%), Positives = 52/158 (32%), Gaps = 7/158 (4%)
Frame = +3
Query: 93 ITKQGDLVRSLKTSKAEKSKIDXXXXXXXXXXXXXXXXTGQDWKPG-----SXXXXXXXX 257
I QG LVR LK A+ +G D KPG S
Sbjct: 808 IEAQGLLVRELKGKDAKSQATKDAIAKLLELKKQYKEVSGSDHKPGVPPAASVASAPAPA 867
Query: 258 XXSNDVTALD--RDVTAQGDLVRSLKASKADKAKIDEAVXXXXXXXXXXXXXXGQDWXXX 431
+ ALD + +QG LVR LK A +A+ G D
Sbjct: 868 PAAGSTNALDIYHQIESQGALVRELKGKDAKSQATKDAIAKLLALKKQYKEVTGSDHKPG 927
Query: 432 XXXXXXXXXXXXXXXXNVAELASQIEAQGDKVRRIKSE 545
A++A QIEAQG VR +K++
Sbjct: 928 VVPVSAPAPTPLAGG---ADIAGQIEAQGVLVRDLKNK 962
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 33.9 bits (74), Expect = 0.079
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +1
Query: 190 PNTRLPPDKIGSQDPRLQQWPPPHRPMTSPLSIVTSPRRETW 315
PNT P K SQDP +QQ PPP P S T R+++
Sbjct: 450 PNT--PTQKASSQDPIVQQDPPPKEPSISSEPTTTKKPRKSF 489
>U23178-4|AAK68300.1| 606|Caenorhabditis elegans Vh1
dual-specificity phosphatasefamily protein 1, isoform b
protein.
Length = 606
Score = 30.3 bits (65), Expect = 0.97
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +1
Query: 127 KRLRPKNRKLTRLSRHCWNSKPNTRLPPDKIGSQDP--RLQQWPPPHRPMTSPLSIVTSP 300
KR + KN+K R + + N PNT P++I QDP L +P + L++ +SP
Sbjct: 14 KRKKTKNKKKRRNNNNSKNKTPNTF--PNEIEEQDPVSSLPTFPAKKFGLKLQLTLTSSP 71
>AF003135-9|AAK18985.3| 1146|Caenorhabditis elegans Guanylyl cyclase
protein 17 protein.
Length = 1146
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 145 NRKLTRLSRHCWNSKPNTRLPPDKIGS 225
N L L R CW KP+ R P D++ S
Sbjct: 837 NPALVHLIRDCWTEKPSERPPIDQVRS 863
>U23412-2|AAN65294.1| 678|Caenorhabditis elegans Glycyl trna
synthetase protein1, isoform b protein.
Length = 678
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 294 VTAQGDLVRSLKASKADKAKIDEAV 368
V GDL+R LKA A K ID+AV
Sbjct: 17 VKEYGDLIRDLKAKGAPKIDIDKAV 41
>U23412-1|AAK21465.2| 742|Caenorhabditis elegans Glycyl trna
synthetase protein1, isoform a protein.
Length = 742
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 294 VTAQGDLVRSLKASKADKAKIDEAV 368
V GDL+R LKA A K ID+AV
Sbjct: 81 VKEYGDLIRDLKAKGAPKIDIDKAV 105
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 184 SKPNTRLPPDKIGSQDPRLQQWPPPHRPMTSPLSI 288
+KP PP K + P + PPP P + P+ I
Sbjct: 87 AKPTPPPPPPKPTIRPPPIPASPPPRPPASEPVGI 121
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 184 SKPNTRLPPDKIGSQDPRLQQWPPPHRPMTSPLSI 288
+KP PP K + P + PPP P + P+ I
Sbjct: 309 AKPTPPPPPPKPTIRPPPIPASPPPRPPASEPVGI 343
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,332,027
Number of Sequences: 27780
Number of extensions: 121904
Number of successful extensions: 425
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -