Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11e17
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   4.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   4.8  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   8.4  

>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +1

Query: 172 HCWNSKPNTRLPPDKIGSQDPRLQQWPPP 258
           HC N  P    P   I  Q PR +   PP
Sbjct: 351 HCGNFPPRPMGPWISIQEQVPRFRYIGPP 379


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +1

Query: 166 SRHCWNSKPNTRLPPDKIGSQDPRLQQWPPPHRPMTSPLSIVTSPRR 306
           +++C ++  + R    KIGS  P    + P  R + SP++     RR
Sbjct: 642 NQNCLDASSSRR--GSKIGSPTPAESTFIPEERRIYSPITFQDVARR 686


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 220 GSQDPRLQQWPPPHRPMTSPLSIVTS 297
           G  +  +Q  PPP+R     +S++TS
Sbjct: 481 GRIENTIQGLPPPYRLNKPLMSLITS 506


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,929
Number of Sequences: 438
Number of extensions: 1889
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)