BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov11e17 (555 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA ... 32 0.22 At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 29 1.6 At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 29 2.8 At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 29 2.8 At1g78815.1 68414.m09187 expressed protein contains Pfam profile... 28 3.6 At1g21695.1 68414.m02716 hydroxyproline-rich glycoprotein family... 28 3.6 At1g10620.1 68414.m01204 protein kinase family protein contains ... 28 3.6 At2g36010.3 68415.m04422 E2F transcription factor-3 (E2F3) ident... 27 6.4 At2g36010.2 68415.m04421 E2F transcription factor-3 (E2F3) ident... 27 6.4 At2g36010.1 68415.m04420 E2F transcription factor-3 (E2F3) ident... 27 6.4 At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 27 8.4 >At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA ligase identical to SP|O23627 Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA ligase) (GlyRS) {Arabidopsis thaliana} Length = 729 Score = 32.3 bits (70), Expect = 0.22 Identities = 15/25 (60%), Positives = 20/25 (80%) Frame = +3 Query: 294 VTAQGDLVRSLKASKADKAKIDEAV 368 V AQG+ VR+LKAS+A K +ID A+ Sbjct: 58 VEAQGNAVRALKASRAAKPEIDAAI 82 >At5g14920.1 68418.m01750 gibberellin-regulated family protein similar to SP|P46689 Gibberellin-regulated protein 1 precursor {Arabidopsis thaliana}; contains Pfam profile PF02704: Gibberellin regulated protein Length = 275 Score = 29.5 bits (63), Expect = 1.6 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +1 Query: 187 KPNTRLPPDKIGSQDPRLQQWPPPHRPMTSPLSIVTSP 300 KP T PP K + P +Q PP + P T+P+ T+P Sbjct: 165 KPPTTTPPVKPPTTTPPVQ--PPTYNPPTTPVKPPTAP 200 >At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative similar to SP|Q05856 Small nuclear ribonucleoprotein associated protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB) {Drosophila melanogaster} Length = 257 Score = 28.7 bits (61), Expect = 2.8 Identities = 13/37 (35%), Positives = 16/37 (43%) Frame = +1 Query: 190 PNTRLPPDKIGSQDPRLQQWPPPHRPMTSPLSIVTSP 300 P LPP G Q P + + PPP M P + P Sbjct: 162 PGQMLPPPPFGGQGPPMGRGPPPPYGMRPPPQQFSGP 198 >At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative similar to SP|Q05856 Small nuclear ribonucleoprotein associated protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB) {Drosophila melanogaster} Length = 257 Score = 28.7 bits (61), Expect = 2.8 Identities = 13/37 (35%), Positives = 16/37 (43%) Frame = +1 Query: 190 PNTRLPPDKIGSQDPRLQQWPPPHRPMTSPLSIVTSP 300 P LPP G Q P + + PPP M P + P Sbjct: 162 PGQMLPPPPFGGQGPPMGRGPPPPYGMRPPPQQFSGP 198 >At1g78815.1 68414.m09187 expressed protein contains Pfam profile PF04852: Protein of unknown function (DUF640) Length = 195 Score = 28.3 bits (60), Expect = 3.6 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 4/36 (11%) Frame = +1 Query: 220 GSQDPRLQQWPPPHRPMTSP----LSIVTSPRRETW 315 GS P+ Q P PH+P + P LS S +R W Sbjct: 14 GSSQPQSQPQPQPHQPQSPPNPPALSRYESQKRRDW 49 >At1g21695.1 68414.m02716 hydroxyproline-rich glycoprotein family protein contains proline-rich extensin domains, INTERPRO:IPR002965 Length = 217 Score = 28.3 bits (60), Expect = 3.6 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +1 Query: 178 WNSKPNTRLPPDKIGSQDPRLQQWPPPHRPMTSPLSIVTSP 300 W +P +P + G DP L Q PPP++ PL + ++P Sbjct: 18 WEIRPG--VPKTRPGDDDPALLQPPPPNK--LPPLKLKSTP 54 >At1g10620.1 68414.m01204 protein kinase family protein contains serine/threonine protein kinases active-site signature, PROSITE:PS00108 Length = 718 Score = 28.3 bits (60), Expect = 3.6 Identities = 14/38 (36%), Positives = 16/38 (42%) Frame = +1 Query: 181 NSKPNTRLPPDKIGSQDPRLQQWPPPHRPMTSPLSIVT 294 N PNT PP S P + P P +P P S T Sbjct: 71 NQPPNTTPPPTPPSSPPPSITPPPSPPQPQPPPQSTPT 108 >At2g36010.3 68415.m04422 E2F transcription factor-3 (E2F3) identical to E2F transcription factor-3 E2F3 [Arabidopsis thaliana] gi|10443853|gb|AAG17610 Length = 485 Score = 27.5 bits (58), Expect = 6.4 Identities = 8/17 (47%), Positives = 13/17 (76%) Frame = +1 Query: 250 PPPHRPMTSPLSIVTSP 300 PPPH P +SP+ + ++P Sbjct: 17 PPPHHPPSSPVPVTSTP 33 >At2g36010.2 68415.m04421 E2F transcription factor-3 (E2F3) identical to E2F transcription factor-3 E2F3 [Arabidopsis thaliana] gi|10443853|gb|AAG17610 Length = 514 Score = 27.5 bits (58), Expect = 6.4 Identities = 8/17 (47%), Positives = 13/17 (76%) Frame = +1 Query: 250 PPPHRPMTSPLSIVTSP 300 PPPH P +SP+ + ++P Sbjct: 17 PPPHHPPSSPVPVTSTP 33 >At2g36010.1 68415.m04420 E2F transcription factor-3 (E2F3) identical to E2F transcription factor-3 E2F3 [Arabidopsis thaliana] gi|10443853|gb|AAG17610 Length = 483 Score = 27.5 bits (58), Expect = 6.4 Identities = 8/17 (47%), Positives = 13/17 (76%) Frame = +1 Query: 250 PPPHRPMTSPLSIVTSP 300 PPPH P +SP+ + ++P Sbjct: 17 PPPHHPPSSPVPVTSTP 33 >At4g33970.1 68417.m04820 leucine-rich repeat family protein / extensin family protein similar to extensin-like protein [Lycopersicon esculentum] gi|5917664|gb|AAD55979; contains leucine-rich repeats, Pfam:PF00560; contains proline rich extensin domains, INTERPRO:IPR002965 Length = 699 Score = 27.1 bits (57), Expect = 8.4 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = +1 Query: 205 PPDKIGSQDPRLQQWPPPHRPMTSPLSIVTSP 300 PP + S P + PPP P+ SP V SP Sbjct: 519 PPAPVNSPPPPVYSPPPPPPPVHSPPPPVHSP 550 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,103,464 Number of Sequences: 28952 Number of extensions: 120550 Number of successful extensions: 490 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 416 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 485 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1053014392 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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