Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11e17
         (555 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA ...    32   0.22 
At5g14920.1 68418.m01750 gibberellin-regulated family protein si...    29   1.6  
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa...    29   2.8  
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa...    29   2.8  
At1g78815.1 68414.m09187 expressed protein contains Pfam profile...    28   3.6  
At1g21695.1 68414.m02716 hydroxyproline-rich glycoprotein family...    28   3.6  
At1g10620.1 68414.m01204 protein kinase family protein contains ...    28   3.6  
At2g36010.3 68415.m04422 E2F transcription factor-3 (E2F3) ident...    27   6.4  
At2g36010.2 68415.m04421 E2F transcription factor-3 (E2F3) ident...    27   6.4  
At2g36010.1 68415.m04420 E2F transcription factor-3 (E2F3) ident...    27   6.4  
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex...    27   8.4  

>At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA
           ligase identical to SP|O23627 Glycyl-tRNA synthetase (EC
           6.1.1.14) (Glycine--tRNA ligase) (GlyRS) {Arabidopsis
           thaliana}
          Length = 729

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = +3

Query: 294 VTAQGDLVRSLKASKADKAKIDEAV 368
           V AQG+ VR+LKAS+A K +ID A+
Sbjct: 58  VEAQGNAVRALKASRAAKPEIDAAI 82


>At5g14920.1 68418.m01750 gibberellin-regulated family protein
           similar to SP|P46689 Gibberellin-regulated protein 1
           precursor {Arabidopsis thaliana}; contains Pfam profile
           PF02704: Gibberellin regulated protein
          Length = 275

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 187 KPNTRLPPDKIGSQDPRLQQWPPPHRPMTSPLSIVTSP 300
           KP T  PP K  +  P +Q  PP + P T+P+   T+P
Sbjct: 165 KPPTTTPPVKPPTTTPPVQ--PPTYNPPTTPVKPPTAP 200


>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
           protein B, putative / snRNP-B, putative / Sm protein B,
           putative similar to SP|Q05856 Small nuclear
           ribonucleoprotein associated protein B (snRNP-B) (Sm
           protein B) (Sm-B) (SmB) {Drosophila melanogaster}
          Length = 257

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +1

Query: 190 PNTRLPPDKIGSQDPRLQQWPPPHRPMTSPLSIVTSP 300
           P   LPP   G Q P + + PPP   M  P    + P
Sbjct: 162 PGQMLPPPPFGGQGPPMGRGPPPPYGMRPPPQQFSGP 198


>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
           protein B, putative / snRNP-B, putative / Sm protein B,
           putative similar to SP|Q05856 Small nuclear
           ribonucleoprotein associated protein B (snRNP-B) (Sm
           protein B) (Sm-B) (SmB) {Drosophila melanogaster}
          Length = 257

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +1

Query: 190 PNTRLPPDKIGSQDPRLQQWPPPHRPMTSPLSIVTSP 300
           P   LPP   G Q P + + PPP   M  P    + P
Sbjct: 162 PGQMLPPPPFGGQGPPMGRGPPPPYGMRPPPQQFSGP 198


>At1g78815.1 68414.m09187 expressed protein contains Pfam profile
           PF04852: Protein of unknown function (DUF640)
          Length = 195

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = +1

Query: 220 GSQDPRLQQWPPPHRPMTSP----LSIVTSPRRETW 315
           GS  P+ Q  P PH+P + P    LS   S +R  W
Sbjct: 14  GSSQPQSQPQPQPHQPQSPPNPPALSRYESQKRRDW 49


>At1g21695.1 68414.m02716 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 217

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 178 WNSKPNTRLPPDKIGSQDPRLQQWPPPHRPMTSPLSIVTSP 300
           W  +P   +P  + G  DP L Q PPP++    PL + ++P
Sbjct: 18  WEIRPG--VPKTRPGDDDPALLQPPPPNK--LPPLKLKSTP 54


>At1g10620.1 68414.m01204 protein kinase family protein contains
           serine/threonine protein kinases active-site signature,
           PROSITE:PS00108
          Length = 718

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = +1

Query: 181 NSKPNTRLPPDKIGSQDPRLQQWPPPHRPMTSPLSIVT 294
           N  PNT  PP    S  P +   P P +P   P S  T
Sbjct: 71  NQPPNTTPPPTPPSSPPPSITPPPSPPQPQPPPQSTPT 108


>At2g36010.3 68415.m04422 E2F transcription factor-3 (E2F3)
           identical to E2F transcription factor-3 E2F3
           [Arabidopsis thaliana] gi|10443853|gb|AAG17610
          Length = 485

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 250 PPPHRPMTSPLSIVTSP 300
           PPPH P +SP+ + ++P
Sbjct: 17  PPPHHPPSSPVPVTSTP 33


>At2g36010.2 68415.m04421 E2F transcription factor-3 (E2F3)
           identical to E2F transcription factor-3 E2F3
           [Arabidopsis thaliana] gi|10443853|gb|AAG17610
          Length = 514

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 250 PPPHRPMTSPLSIVTSP 300
           PPPH P +SP+ + ++P
Sbjct: 17  PPPHHPPSSPVPVTSTP 33


>At2g36010.1 68415.m04420 E2F transcription factor-3 (E2F3)
           identical to E2F transcription factor-3 E2F3
           [Arabidopsis thaliana] gi|10443853|gb|AAG17610
          Length = 483

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 250 PPPHRPMTSPLSIVTSP 300
           PPPH P +SP+ + ++P
Sbjct: 17  PPPHHPPSSPVPVTSTP 33


>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 699

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 205 PPDKIGSQDPRLQQWPPPHRPMTSPLSIVTSP 300
           PP  + S  P +   PPP  P+ SP   V SP
Sbjct: 519 PPAPVNSPPPPVYSPPPPPPPVHSPPPPVHSP 550


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,103,464
Number of Sequences: 28952
Number of extensions: 120550
Number of successful extensions: 490
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)