Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11e16
         (663 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59689| Best HMM Match : Pkinase (HMM E-Value=0.007)                 61   9e-10
SB_26833| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_15979| Best HMM Match : Pkinase (HMM E-Value=0)                     40   0.001
SB_28889| Best HMM Match : ANF_receptor (HMM E-Value=1.1e-34)          37   0.013
SB_26666| Best HMM Match : Pkinase (HMM E-Value=3.7e-38)               36   0.022
SB_42711| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.84 
SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)                     31   1.1  
SB_38683| Best HMM Match : Ldh_1_N (HMM E-Value=1.7e-11)               30   1.9  
SB_31780| Best HMM Match : Pkinase (HMM E-Value=0)                     30   1.9  
SB_51111| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_33664| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_12332| Best HMM Match : PI-PLC-X (HMM E-Value=0)                    29   3.4  
SB_33663| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_23400| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_20707| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_37880| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25)                  28   5.9  
SB_25669| Best HMM Match : LRR_1 (HMM E-Value=9.1e-33)                 28   5.9  
SB_9033| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.8  

>SB_59689| Best HMM Match : Pkinase (HMM E-Value=0.007)
          Length = 881

 Score = 60.9 bits (141), Expect = 9e-10
 Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 2/140 (1%)
 Frame = +3

Query: 210 YDVGEPVPELEDRSVWTLHKGKKRGT--QDEVSIFLFDVQKNSETLFDIAKASLKRLKTT 383
           YD+ EP+      S W L+  + RG      VS+F+    K         +   + LK  
Sbjct: 13  YDLEEPLET--SSSDWVLYPAQSRGEGPSTRVSVFVHKKSKKERKQKGGGQKFSQILKVL 70

Query: 384 RHPSLLHYLDSCETEKFLYIATEYVEPLSTHLECMRLEGQQKDLFLAWGVFQITRALSFL 563
           RHP++L Y  S      + + TE VEPL   L  + ++       +  G++ I +AL FL
Sbjct: 71  RHPAILKYYSSHNGSDEVAMVTEPVEPLEHVLNDLAVDE------IVAGIYNIVQALVFL 124

Query: 564 NNDGNMRHNNVCLYSVFVTL 623
           +++G + HN+V L SV+V++
Sbjct: 125 HDNGGLSHNSVGLSSVYVSV 144


>SB_26833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 854

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
 Frame = +3

Query: 264 HKGKKRGTQDEVSIF-LFDVQKNSET-LFDIAKASLKRLKTTRHPSLLHYLDSCETEKFL 437
           H G+      E+SI  L +  K+  T + +I   +    +  RHP+++ Y  + E ++ L
Sbjct: 216 HSGQSFLAMKEISIHSLGNTAKDRGTSVGEIVNETTIMREQLRHPNIVRYFKAFEEKEKL 275

Query: 438 YIATEYVE--PLSTHLECMRLEGQQKDLFLAWGVF-QITRALSFLNNDGNMRHNNV 596
           YI  E VE  PL  H   ++ +G +      W +F QI   L +++ + ++ H ++
Sbjct: 276 YIIMELVEGAPLGEHFNSLKEKGTRFSEERIWHIFIQIVLGLRYIHKEKHIVHRDL 331


>SB_15979| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 367

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
 Frame = +3

Query: 375 KTTRHPSLLHYLDSCETEKFLYIATEYVE--PLSTHLECMRLEGQQKDLFLAWGVFQITR 548
           K + HP+++ Y DS E E  L I  EY +   L+ +L  +  + ++KD+   +   Q+  
Sbjct: 81  KLSLHPNIISYYDSFEVEGTLMIEMEYADGGTLAQYLTKLEKDMEEKDILNMFQ--QMLS 138

Query: 549 ALSFLNNDGNMRHNNVCLYSVFVT 620
           AL +++N+ N+ H ++   ++F+T
Sbjct: 139 ALKYIHNN-NILHRDLKTANIFLT 161


>SB_28889| Best HMM Match : ANF_receptor (HMM E-Value=1.1e-34)
          Length = 933

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 23/92 (25%), Positives = 41/92 (44%)
 Frame = +3

Query: 180 FSRDPTKDFPYDVGEPVPELEDRSVWTLHKGKKRGTQDEVSIFLFDVQKNSETLFDIAKA 359
           F+    KDF YD       + D   +     +  G      + L  ++K+S TL      
Sbjct: 420 FASKVIKDFSYDNQSRCSRITDMLQYQRSSVRDVGRYKGELVALKMLRKDSLTLTRDMLI 479

Query: 360 SLKRLKTTRHPSLLHYLDSCETEKFLYIATEY 455
            +K+++  +H +LLHY+  C T   + I ++Y
Sbjct: 480 EMKQVRDIQHTNLLHYIGVCTTPPNICIVSQY 511


>SB_26666| Best HMM Match : Pkinase (HMM E-Value=3.7e-38)
          Length = 1215

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = +3

Query: 285 TQDEVSIFLFDVQKNSETLFDIAKASLKRLKTTRHPSLLHYLDSCETEKFLYIATEY 455
           T+ +V++ + D  +  +      K  +K +K   HP ++   +  ETE+ LY+ TEY
Sbjct: 42  TKSKVAVKIIDKSQLDDDNLTKVKREVKVMKKLAHPHIIKLHEVMETERMLYLVTEY 98


>SB_42711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 920

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 15/61 (24%), Positives = 31/61 (50%)
 Frame = +3

Query: 273 KKRGTQDEVSIFLFDVQKNSETLFDIAKASLKRLKTTRHPSLLHYLDSCETEKFLYIATE 452
           + R T+ +V+I + D  + +E         ++ +K  +HP ++      ET+  LY+ T+
Sbjct: 175 RHRITKSQVAIKIIDKTQLNEMNLKKIYREVQIMKLLQHPHIVKLYQVMETKNMLYLVTD 234

Query: 453 Y 455
           Y
Sbjct: 235 Y 235


>SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 937

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +3

Query: 285 TQDEVSIFLFD-VQKNSETLFDIAKASLKRLKTTRHPSLLHYLDSCETEKFLYIATEY 455
           T  EV+I + D  Q N  +L  + +  ++ +K   HP+++   +  ET+K LY+  EY
Sbjct: 105 TGKEVAIKIIDKTQLNPSSLQKLFR-EVRIMKFLDHPNIVKLYEVIETDKTLYLVMEY 161


>SB_38683| Best HMM Match : Ldh_1_N (HMM E-Value=1.7e-11)
          Length = 462

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +3

Query: 258 TLHKGKKRGTQDEVSIFLFDVQKNSETLFDIA 353
           +L +G+  G Q+EVSI+L D  +N E L  +A
Sbjct: 150 SLVQGEVFGFQEEVSIYLLDTPENQEALQGVA 181


>SB_31780| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 964

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 363 LKRLKTTRHPSLLHYLDSCETEKFLYIATEYVE 461
           +K L   +HP+++ Y DS   EK L I  EY +
Sbjct: 52  VKVLSMFQHPNIIRYYDSFVQEKALMIVMEYAQ 84


>SB_51111| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/57 (22%), Positives = 28/57 (49%)
 Frame = +3

Query: 285 TQDEVSIFLFDVQKNSETLFDIAKASLKRLKTTRHPSLLHYLDSCETEKFLYIATEY 455
           T+++V+I + D  K  +    +    +  ++   HP+++   +  ET   L+I  EY
Sbjct: 83  TREKVAIKILDKTKLDQKTQRLLSREISSMENLHHPNIIRLYEVIETLSKLHIVMEY 139


>SB_33664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 525

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
 Frame = +3

Query: 357 ASLKRLKTTRHPSLLHYLDSCETEKFLYIATEYVEPLSTHLECMRLEGQ-QKDLFLAWGV 533
           A  + +K  RH +L+     C  E+ +YI TE ++  S     ++ EGQ  K+  L    
Sbjct: 301 AEAQIMKKLRHANLIQLYAVCTNEEPIYIVTELMKHGSLLDYLVKGEGQFLKEPTLIDMA 360

Query: 534 FQITRALSFLNNDGNMRHNNVCLYSVFV 617
            QI   ++FL    N  H ++   ++ V
Sbjct: 361 AQIAAGMAFLEK-MNYIHRDLAARNILV 387


>SB_12332| Best HMM Match : PI-PLC-X (HMM E-Value=0)
          Length = 1038

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 192 PTKDFPYDVGEPVPELEDRSVWTLHKGKKRGTQDEVSI 305
           P  D+P + G P+P L+      + K KKR T+ E +I
Sbjct: 103 PLDDYPLEEGRPLPPLKVLMRKIVIKNKKRSTKREEAI 140


>SB_33663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
 Frame = +3

Query: 345 DIAKASLKRLKTTRHPSLLHYLDSCETEKFLYIATEYVEPLSTHLECMRL-EGQQKDLFL 521
           D   A  + +K   HP L+     C  ++ +YI TE + P  + LE +R  EG+   + +
Sbjct: 290 DAFLAEAELMKKLIHPKLVQLYAVCSRDEPIYIITELM-PKGSLLEHLRSDEGRALSVAI 348

Query: 522 AWGV-FQITRALSFLNNDGNMRHNNVCLYSVFV 617
              +  QI   ++FL   G + H ++   ++ V
Sbjct: 349 QIDMGGQIAEGMAFLEKYGYL-HRDLAARNILV 380


>SB_23400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 387 HPSLLHYLDSCETEKFLYIATEYVE--PLSTHLECMRLE 497
           HP+++  + +C  EK L + TEY+    L  H+  MR +
Sbjct: 106 HPNIVKLIGACSVEKPLLVVTEYLSGGNLLDHVRRMRAQ 144


>SB_20707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 705

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 228 VPELEDRSVWTLHKGKKRGTQDEVSIF-LFDVQKNSETLFDI 350
           VP+ ED  +W LH G+     +E S + L D Q ++E++  I
Sbjct: 602 VPQGEDDEIWWLHNGELIDFAEEGSAYSLPDTQDDAESVLKI 643


>SB_37880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
 Frame = +3

Query: 279 RGTQDEVSIFLFDVQKNSETLFDIAKASLKR----LKTTRHPSLLHYLDSCETEKFLYIA 446
           +GT  + ++ L  + K   ++  ++ AS+K     LK   HP ++   D  E+   LYI 
Sbjct: 70  KGTCHKFAVKL--ISKRQFSVSPVSHASIKDEVNILKALNHPCIIEIADVFESPDMLYIV 127

Query: 447 TEYVE 461
            E VE
Sbjct: 128 LELVE 132


>SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25)
          Length = 941

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -1

Query: 618 LQIQNRGIHCYVSYFHHYLKMIKL*LFGIRPRQEIGLFAD 499
           + +QN+ I   + YFHH  ++ K  LF +R +Q  G + +
Sbjct: 370 INLQNQEISMNIQYFHHMNRLEKKQLFHLR-KQAAGYYME 408


>SB_25669| Best HMM Match : LRR_1 (HMM E-Value=9.1e-33)
          Length = 1065

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 387 HPSLLHYLDSCETEKFLYIATEYV 458
           HP+++  + +C  E  LYI TEYV
Sbjct: 857 HPNVVSLIGTCTIETPLYIITEYV 880


>SB_9033| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = +1

Query: 289 RMKYQYFCSTFKRIRRH 339
           RMK Q FCS FK IR H
Sbjct: 121 RMKTQPFCSVFKEIRVH 137


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,493,313
Number of Sequences: 59808
Number of extensions: 362045
Number of successful extensions: 877
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)