Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11e14
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr...    39   5e-04
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    29   0.33 
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    28   0.76 
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    28   1.0  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    27   1.8  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   1.8  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    27   1.8  
SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual    26   4.1  
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    25   5.4  
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S...    25   5.4  
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces...    25   9.4  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   9.4  

>SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 112

 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 20/100 (20%), Positives = 52/100 (52%)
 Frame = +3

Query: 231 LQVLMIETKKTIENIDHQLAVLGRMQMHTNLTQREIDVLPPGTKTYESMARMFVQSDLEH 410
           +Q   +++++ +  I  Q+A   R    + L ++E++ +      Y S+ +MF++SDL  
Sbjct: 8   IQEKAVDSQQQLRTIMVQIAAKERALKISELAKKELEDVGEDKAVYTSLGKMFMKSDLAS 67

Query: 411 IKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDL 530
           ++ +L  +  +L   I+ L  ++     T + +E +++ +
Sbjct: 68  VRTHLDAEMASLREDIEALQKKQTYHETTASNAEQHLQKI 107


>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
 Frame = +3

Query: 312 HTNLTQREIDVLPPGTKTY-----ESMARMFVQSDLEHIKQN 422
           H  LT   + V PP T+TY     E+   MF+  DLE++ QN
Sbjct: 202 HIALTTSGMSVHPPVTETYTYPVTEAFQGMFLGLDLEYVPQN 243


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
 Frame = +3

Query: 243 MIETKKTIENIDHQLAVLGR-MQMHTNLTQREIDVLPPGTKTYESMARMFVQ--SDLEHI 413
           +++  KTIEN+    +   R + +  +LT+   +VL P  K YE ++++  +  SDL  +
Sbjct: 686 LLKHSKTIENVSSNFSKKNRNVVVSESLTKSMEEVLTP-EKFYERLSKLLEEENSDLGEL 744

Query: 414 KQNL 425
           K +L
Sbjct: 745 KNHL 748


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 354 GTKTYESMARMFVQSDLEHIKQNLRQKTNTL--ISRIDDLN 470
           GTK YE +AR + Q  LE  +Q+ +     L  +S  D+ N
Sbjct: 146 GTKVYEELARKYPQHSLESWRQHYKYMKKRLPPVSDSDESN 186


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 523 LMLDSLSFKVWFKHTFRLFKSSMRLINVLVFC 428
           + L++ S++ W KH F+L   S   +N L  C
Sbjct: 329 IRLENASWRTWMKHKFKLKTISPETLNWLKEC 360


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 15/62 (24%), Positives = 30/62 (48%)
 Frame = +3

Query: 333 EIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESE 512
           E  +LP    +YE++  +F + D +H+ ++       LI +  D +     L H +N+  
Sbjct: 364 ESQILPCVLHSYETLTNVFHRDDSKHLYESAVDHGRRLIMKFSD-SELHTFLFHCVNKIV 422

Query: 513 SN 518
           +N
Sbjct: 423 AN 424


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 11/118 (9%)
 Frame = +3

Query: 207  ELKQAFVDLQVLMIETKKTIENIDHQLAVLGRMQMHTN-----------LTQREIDVLPP 353
            EL +++  LQ  +   K  ++N+  QL++       +N           L     D L  
Sbjct: 741  ELDESYKSLQEQLASKKIEVQNVSSQLSICNSQLEQSNHIVDNLKSENLLLTSVKDKLKA 800

Query: 354  GTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRD 527
                 ES     +Q D  H+K  +        + +D +N+R + L++ L  + S + +
Sbjct: 801  DLSNLESKLSS-LQQDNFHMKAQIESSNQEYTATVDSMNSRILELSNDLRVANSKLSE 857


>SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 257

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 143 PMTILNTNSLVAFRRHGTYLPID 75
           P+ +LNT+  V +  HG Y  +D
Sbjct: 127 PLDMLNTDCCVFYNNHGIYFDMD 149


>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 429 QKTNTLISRIDDLNNRKVCLNHTLNE 506
           QKT + + R+ D N+R++CL  T  E
Sbjct: 92  QKTGSELFRLHDRNDREMCLAPTHEE 117


>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
           Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +3

Query: 9   VIIIDNKHIIFTHSILEYNKCIIYG*VGTVPTKSNEAICI*NCHRC 146
           VI  D + IIFT    E N  I+ G      ++    + +   H+C
Sbjct: 155 VINADPREIIFTSGATESNNAILKGVARFYKSRKKHLVSVQTEHKC 200


>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 3/111 (2%)
 Frame = +3

Query: 141 RCPRR*FYFLTTIIKMAKTVDLELKQAFVDLQVLMIETKKTIENIDHQLAVLGRMQ---M 311
           RCP   +Y  TTI    K    ++++     +    E +  I N+  QL    + Q   +
Sbjct: 2   RCPLAYYYTQTTIPTQQKRKSKKMEELLSKQREECKELQSKITNLRKQLKEGNKKQKRAL 61

Query: 312 HTNLTQREIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDD 464
              ++Q E D+    ++ + +  +   + D E  +       NTL+ +++D
Sbjct: 62  QQKISQMEADL----SQKHATERQKLDKGDEETNETQQEDLLNTLLQQMED 108


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -3

Query: 182 DDSCQKIKS-PSWAPMTILNTNSLVAFRRH 96
           D+   KIK  P W+    LNT SL   + H
Sbjct: 497 DERLVKIKELPEWSHQAFLNTQSLNRIQSH 526


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,250,383
Number of Sequences: 5004
Number of extensions: 44968
Number of successful extensions: 101
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)