Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11e14
         (535 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.78 
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              30   1.4  
SB_3823| Best HMM Match : KE2 (HMM E-Value=4.4e-20)                    29   2.4  
SB_37253| Best HMM Match : Atrophin-1 (HMM E-Value=0.68)               29   3.2  
SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16)                   29   3.2  
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_26831| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38)          28   5.5  
SB_24887| Best HMM Match : PspA_IM30 (HMM E-Value=0.19)                28   5.5  
SB_57007| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_2961| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.3  
SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)             27   7.3  
SB_45487| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_33562| Best HMM Match : ATP-synt_8 (HMM E-Value=0.37)               27   9.6  
SB_22760| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_19678| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)                   27   9.6  
SB_36787| Best HMM Match : Ribosomal_S14 (HMM E-Value=3.3)             27   9.6  
SB_29727| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_28984| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_15026| Best HMM Match : Amidohydro_1 (HMM E-Value=0.022)            27   9.6  

>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2193

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 393  QSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLI 533
            + D+EH  + LR       SRI +L ++K   +  + E E  I +L+
Sbjct: 1780 RDDMEHRNKQLRDDVVNFQSRITELEHKKKKADEKIEEQEDEIHELL 1826


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
 Frame = +3

Query: 207  ELKQAFVDLQVLMIETKKTIENIDHQLAVLGRMQMHTNLTQREIDVLPPGTKTYES-MAR 383
            EL+Q F   Q    E   T++ ++ + A   +++      + E+D +    + + S +AR
Sbjct: 2249 ELQQQFDARQAEFAERGYTVQRLEDE-ADNDKLRRDLAALRNEMDNMNAEKRDHMSELAR 2307

Query: 384  MFVQ-SDLEHIKQNLRQKTNTLISRIDDLNNR 476
               Q +DLE+  Q+ R++ + L   IDDL N+
Sbjct: 2308 AQPQIADLENKLQDAREQNSRLKIEIDDLRNK 2339


>SB_3823| Best HMM Match : KE2 (HMM E-Value=4.4e-20)
          Length = 159

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
 Frame = +3

Query: 234 QVLMIETKK-TIENIDHQLAVLGRMQMHTNLTQR-----EIDVLPPGTKTYESMARMFVQ 395
           Q L  E +K     ID Q +V  R Q+   L++      E+D +      Y+ +  + V+
Sbjct: 10  QQLQTELEKYKAHQIDLQKSVSTRQQLDAQLSENTVVKEELDKISSDGNVYKLIGPVLVK 69

Query: 396 SDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESE 512
            DLE  KQ       T+  RID +N      +  +NE E
Sbjct: 70  QDLEEAKQ-------TVSKRIDYINGEIKRQDGMINEME 101


>SB_37253| Best HMM Match : Atrophin-1 (HMM E-Value=0.68)
          Length = 1113

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 161 KSPSWAPMTILNTNSLVAFRRHGTYLPIDYTL 66
           KSP+W      NT  L+A R   T +P   T+
Sbjct: 300 KSPTWTSNACTNTTGLIAVRTAATTIPASATV 331


>SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16)
          Length = 1456

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 402 LEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRD 527
           +EH++  + +K  T  S    LNN K  L H ++E+   + D
Sbjct: 31  IEHVETRMSKKMGTSCSDYRALNNVKGVLGHVMDETLEGMAD 72


>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2520

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +3

Query: 399  DLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLI 533
            DL++++  ++QK      + +DL+N    L+     SE  +RD++
Sbjct: 998  DLDNLRNEIKQKEKQSKEKDEDLHNNLRDLSDERQTSELKVRDIL 1042


>SB_26831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 932

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 390 VQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDL 530
           V+  L  +KQNL  ++   +   ++L   K   NH L +SE    +L
Sbjct: 100 VEGKLNRLKQNLEVESKRNVELKNELERLKCDFNHELIKSEKQASEL 146


>SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38)
          Length = 919

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = -1

Query: 493 WFKHTFRLFKSSMRLIN-VLVFCLKFCLICSKSD*TNILAIDS*VFVPGGSTSISR*VRF 317
           W K TF +F +++ L + + +  +   +I S+S   ++L+ D+ V VPG   +    V  
Sbjct: 14  WLK-TFHMFFNTILLFSGIAILAVGIWVITSRSQYNSLLSNDNYVTVPGLMIAAGCLVII 72

Query: 316 VCI 308
           VC+
Sbjct: 73  VCV 75


>SB_24887| Best HMM Match : PspA_IM30 (HMM E-Value=0.19)
          Length = 320

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 402 LEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDL 530
           L+H  +   +K + L SR++DL +    L+H+L   E  I DL
Sbjct: 140 LQHTIKLKDKKIDGLESRLEDLESANNKLHHSLKFKEEKISDL 182


>SB_57007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 666

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 149 WAPMTILNTNSLVAFRRHGTYLPIDYTLIIFEYRVGENNMF-IIYDN 12
           W P+TI N +S     R+        TL+     +G  N+F I+Y+N
Sbjct: 263 WIPLTINNVSSFNIVTRNAIVEATVSTLLCVLSIIGNTNLFMIVYNN 309


>SB_2961| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 490 FKHTFRLFKSSMRLINVLVFCLKFCLICSKS 398
           +KH      SS RL +  +FCLKFC +  KS
Sbjct: 41  YKHEAGEKASSCRLCDDYLFCLKFCDLRIKS 71


>SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)
          Length = 333

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -3

Query: 197 RFSHFDDSCQKIKSPSWAPMTILNTNSLVAFR--RHGTYLPIDYTL 66
           +F+HF+D  Q + +P  A +T+     L+ F+  +H T + + Y +
Sbjct: 57  QFAHFEDDDQIVSNPHIAVLTLTGERILIPFKSPKH-TIIEVKYLI 101


>SB_45487| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1236

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 411 IKQNLRQKTNTLISRIDDL-NNRKVCLNHTLNESESN 518
           +K N   K ++  SRI +L NN +  L H LN +E N
Sbjct: 811 VKNNDIPKFHSQYSRISELSNNNEKILMHALNNTEPN 847


>SB_33562| Best HMM Match : ATP-synt_8 (HMM E-Value=0.37)
          Length = 292

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 297 GRMQMHTNLTQREIDVLPPGTKTY 368
           G M  HT  TQ  +  + PGT TY
Sbjct: 86  GDMTSHTTTTQHTVVTVQPGTTTY 109


>SB_22760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 570

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -3

Query: 131 LNTNSLVAFRRHGTYLPIDYTLIIFEYRVGENNMFIIYDND 9
           L  NSL+A+     +       ++FE++  + N F+IY++D
Sbjct: 22  LRFNSLLAYAIFDRWDATTNGTLLFEFKTQKENGFLIYEDD 62


>SB_19678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 849

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = +3

Query: 321 LTQREIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLIS----RIDDLNNRKVCL 488
           + +RE+ + PPGT   +   +  V+ ++   ++   Q TN  I+      +D NN     
Sbjct: 253 MVKRELGIRPPGTLLVKRFWQKIVKKEINGKQEQQLQMTNETIADDDIEFEDENNNGSVR 312

Query: 489 NHTLNESESN 518
           ++ + E  S+
Sbjct: 313 DNAITELVSD 322


>SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)
          Length = 551

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 466 KSSMRLINVLVFCLKFCLICSKSD*TNILAIDS*VFVPG 350
           K S R IN+++ CL+ CL    SD    L + +   V G
Sbjct: 173 KISPRKINIIISCLESCLTLRDSDGDTPLLVAAKTLVAG 211


>SB_36787| Best HMM Match : Ribosomal_S14 (HMM E-Value=3.3)
          Length = 280

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -1

Query: 466 KSSMRLINVLVFCLKFC 416
           KSS RL +  +FCLKFC
Sbjct: 214 KSSCRLCDNYLFCLKFC 230


>SB_29727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -1

Query: 466 KSSMRLINVLVFCLKFC 416
           KSS RL +  +FCLKFC
Sbjct: 75  KSSCRLCDNYLFCLKFC 91


>SB_28984| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 193

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = -1

Query: 481 TFRLFKSSMRLINVLVFC--LKFCLICSK 401
           TFRLFKS+ +L + L+ C  +K C+  +K
Sbjct: 69  TFRLFKSNYKLEDYLLECKIIKLCVALTK 97


>SB_15026| Best HMM Match : Amidohydro_1 (HMM E-Value=0.022)
          Length = 217

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 131 LNTNSLVAFRRHGTYLPIDY 72
           +NT++++A  R G Y PI+Y
Sbjct: 107 INTSNILAITREGNYTPINY 126


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,137,506
Number of Sequences: 59808
Number of extensions: 318645
Number of successful extensions: 719
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)