Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11e14
         (535 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29990.1 68414.m03668 prefoldin, putative similar to Swiss-Pr...    31   0.48 
At5g15800.1 68418.m01848 developmental protein SEPALLATA1 / flor...    29   2.6  
At4g21400.1 68417.m03091 protein kinase family protein contains ...    28   4.5  
At5g55870.1 68418.m06964 hypothetical protein contains Pfam prof...    27   7.9  
At3g52090.1 68416.m05716 DNA-directed RNA polymerase II 13.6 kDa...    27   7.9  
At2g25530.1 68415.m03056 AFG1-like ATPase family protein contain...    27   7.9  

>At1g29990.1 68414.m03668 prefoldin, putative similar to
           Swiss-Prot:O15212 prefoldin subunit 6 (Protein Ke2)
           [Homo sapiens]
          Length = 129

 Score = 31.1 bits (67), Expect = 0.48
 Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
 Frame = +3

Query: 276 DHQLAVLGRMQMHTN-LTQREIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLIS 452
           +HQL     +Q+  N L  +E+D+L      Y+ +  + V+ DL     N+R++   + +
Sbjct: 30  NHQLRKKYTIQLGENELVLKELDLLEEDANVYKLIGPVLVKQDLAEANANVRKRIEYISA 89

Query: 453 RIDDLNNRKVCLNHTLNESESNIRDLI 533
            +  L+     +   + E ++N R+ I
Sbjct: 90  ELKRLD----AILQDMEEKQNNKRETI 112


>At5g15800.1 68418.m01848 developmental protein SEPALLATA1 / floral
           homeotic protein (AGL2) (SEP1) identical to
           developmental protein SEPALLATA1 / floral homeotic
           protein (AGL2 / SEP1) SP:P29382 from [Arabidopsis
           thaliana]
          Length = 251

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 3/119 (2%)
 Frame = +3

Query: 186 MAKTVDLELKQAFVDLQVLMIETKKTIENIDHQLAVLGRMQMHTNLTQREI---DVLPPG 356
           M KT+D   K ++  ++V     K+   +    L + GR + +    QR +   D+ P  
Sbjct: 63  MLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYE-NLQRQQRNLLGEDLGPLN 121

Query: 357 TKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLI 533
           +K  E + R    S    +KQ    KT  ++ ++ DL N++  L  T       + D+I
Sbjct: 122 SKELEQLERQLDGS----LKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMKLDDMI 176


>At4g21400.1 68417.m03091 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 711

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 18  IDNKHII-FTHSILEYNKCIIYG*VGTVPTKSNEA 119
           + N+ ++ +TH +  Y+  IIYG   T PT S +A
Sbjct: 116 LTNQAVVWYTHCMFRYSNMIIYGRKETTPTLSFQA 150


>At5g55870.1 68418.m06964 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 224

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 323 KICMHLHASQYGKLVIYIFNSLFSFN 246
           KI +H   S+YG  VIYI NS+   N
Sbjct: 171 KIKIHQFQSKYGLSVIYIINSINLLN 196


>At3g52090.1 68416.m05716 DNA-directed RNA polymerase II 13.6 kDa
           subunit (RPB13.6) identical to SP|Q38859 DNA-directed
           RNA polymerase II 13.6 kDa polypeptide (EC 2.7.7.6)
           {Arabidopsis thaliana}
          Length = 116

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 19/72 (26%), Positives = 30/72 (41%)
 Frame = +3

Query: 261 TIENIDHQLAVLGRMQMHTNLTQREIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTN 440
           T+E  DH +  + RMQ+H +          P    Y+ + R+   S    + Q   Q  N
Sbjct: 34  TVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIHTTSQSSPM-QAYNQAIN 92

Query: 441 TLISRIDDLNNR 476
            L   +D L N+
Sbjct: 93  DLDKELDYLKNQ 104


>At2g25530.1 68415.m03056 AFG1-like ATPase family protein contains
           Pfam profile: PF03969 AFG1-like ATPase
          Length = 655

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +3

Query: 348 PPGTKTYESMARMFVQ---SDLEHIKQNLRQKTNTLISRIDDLNNRKVCL 488
           P G   Y ++A+ +     SD+  +   +R K    I+ +D+L N   CL
Sbjct: 507 PVGAADYIAVAKNYHTIFISDIPAMSMEIRDKARRFITLVDELYNHHCCL 556


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,253,701
Number of Sequences: 28952
Number of extensions: 217489
Number of successful extensions: 431
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)