Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11e13
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13940.1 68417.m02157 adenosylhomocysteinase / S-adenosyl-L-h...   170   8e-43
At3g23810.1 68416.m02993 adenosylhomocysteinase, putative / S-ad...   165   2e-41
At3g21670.1 68416.m02732 nitrate transporter (NTP3) nearly ident...    29   2.0  
At4g16050.1 68417.m02435 expressed protein                             29   3.6  
At2g34360.1 68415.m04207 MATE efflux family protein similar to r...    29   3.6  
At1g45191.2 68414.m05184 glycosyl hydrolase family 1 protein Sin...    29   3.6  
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    28   4.7  
At2g36480.1 68415.m04477 zinc finger (C2H2-type) family protein ...    28   6.2  

>At4g13940.1 68417.m02157 adenosylhomocysteinase /
           S-adenosyl-L-homocysteine hydrolase / AdoHcyase (SAHH)
           identical to SP|O23255 Adenosylhomocysteinase (EC
           3.3.1.1) (S-adenosyl-L-homocysteine hydrolase)
           (AdoHcyase) {Arabidopsis thaliana}; strong similarity to
           SP|P50248 Adenosylhomocysteinase (EC 3.3.1.1) {Nicotiana
           sylvestris}
          Length = 485

 Score =  170 bits (413), Expect = 8e-43
 Identities = 82/156 (52%), Positives = 108/156 (69%), Gaps = 2/156 (1%)
 Frame = +2

Query: 158 YKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIET 337
           YK+ D   A++GR E+ LAE EMPGLMACR ++ P++  KGARI GSLHMT+QTAVLIET
Sbjct: 14  YKVKDMSQADFGRLELELAEVEMPGLMACRTEFGPSQPFKGARITGSLHMTIQTAVLIET 73

Query: 338 LIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTLIFPDGKPL 517
           L  LGAEV+W S NI+STQD AAAA+      ++AWKGET  EY WC E+ L +  G   
Sbjct: 74  LTALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCTERALDWGPGGGP 133

Query: 518 NMILDDGGDLTNLVH--TKYPDLLKDVKGITEETTT 619
           ++I+DDGGD T L+H   K  ++ +    + + T+T
Sbjct: 134 DLIVDDGGDATLLIHEGVKAEEIFEKTGQVPDPTST 169



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 566 KYPDLLKDVKGITEETTTGVHNLYK 640
           KY  + + + G++EETTTGV  LY+
Sbjct: 191 KYHKMKERLVGVSEETTTGVKRLYQ 215


>At3g23810.1 68416.m02993 adenosylhomocysteinase, putative /
           S-adenosyl-L-homocysteine hydrolase, putative /
           AdoHcyase, putative strong similarity to
           SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1)
           (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
           {Nicotiana sylvestris}; contains Pfam profile PF00670:
           S-adenosyl-L-homocysteine hydrolase, NAD binding domain
          Length = 485

 Score =  165 bits (401), Expect = 2e-41
 Identities = 78/135 (57%), Positives = 99/135 (73%)
 Frame = +2

Query: 158 YKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIET 337
           YK+ D   A++GR EI LAE EMPGL++C  ++ P++ LKGARI GSLHMT+QTAVLIET
Sbjct: 14  YKVKDMSQADFGRLEIELAEVEMPGLVSCVTEFGPSQPLKGARITGSLHMTIQTAVLIET 73

Query: 338 LIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTLIFPDGKPL 517
           L  LGAEV+W S NI+STQD AAAA+      ++AWKGET  EY WC E+ L +  G   
Sbjct: 74  LTALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCTERALDWGPGGGP 133

Query: 518 NMILDDGGDLTNLVH 562
           ++I+DDGGD T L+H
Sbjct: 134 DLIVDDGGDATLLIH 148



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 566 KYPDLLKDVKGITEETTTGVHNLYK 640
           KY  + + + G++EETTTGV  LY+
Sbjct: 191 KYHKMKERLVGVSEETTTGVKRLYQ 215


>At3g21670.1 68416.m02732 nitrate transporter (NTP3) nearly
           identical to nitrate transporter [Arabidopsis thaliana]
           GI:4490323; contains Pfam profile: PF00854 POT family
          Length = 590

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 597 PFTSFKRSGYLVWTKFVKSPPSSKIILRGF 508
           PFT+  R G+L W K  +S P+   +L G+
Sbjct: 255 PFTTIWRVGFLAWKKRKESYPAHPSLLNGY 284


>At4g16050.1 68417.m02435 expressed protein
          Length = 666

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -3

Query: 630 LCTPVVVSSVIPFTSFKRSGYLVWTKFVKSPPSSKIILRGFP 505
           +C    + +V+  + FK     +W +F    P +K+I RG P
Sbjct: 252 ICVLASIQNVLASSLFKLVQVWIWERFKSIRPEAKVIPRGQP 293


>At2g34360.1 68415.m04207 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 466

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
 Frame = +2

Query: 278 GARIAGSLHMTVQTAVLIETLIELGAEVQWSSSN---IYSTQDEAAAAL 415
           GA++ G L + +Q A+L+ TL+ +   + W+++    ++  QD++ A L
Sbjct: 98  GAKMYGMLGIQMQRAMLVLTLLSVPLSIVWANTEHFLVFFGQDKSIAHL 146


>At1g45191.2 68414.m05184 glycosyl hydrolase family 1 protein Since
           this genomic sequence region is unfinished, the
           annotated gene may be missing a stop codon or start
           codon
          Length = 487

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 371 SSNIYSTQDEAAAALVAVGIPIYAWKGETDDE 466
           SS++YS  D     +   GI  Y W+G  D++
Sbjct: 25  SSDLYSRSDFPEGFVFGAGISAYQWEGAVDED 56


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -1

Query: 548 LSHPHHPRSY*EAFHQGRSMFVQYTKYTRHQFLPSRHRWVFLRQPVQLRPRLVYY-KCYC 372
           L HPHH         Q   +  QY  +     LPSRHR +  R+    R  L +  +   
Sbjct: 626 LLHPHHL-----LLPQLSHLPHQYLHHRLRHILPSRHRHLLRRKHTIHRNHLHHNPRNLQ 680

Query: 371 WTIVPLLPILL 339
           +T +PLLP+ L
Sbjct: 681 FTALPLLPLYL 691


>At2g36480.1 68415.m04477 zinc finger (C2H2-type) family protein
           weak similarity to S-locus protein 4 (GI:6069478)
           [Brassica rapa]; weak similarity to Pre-mRNA cleavage
           complex II protein Pcf11 (Fragment) (Swiss-Prot:O94913)
           [Homo sapiens]; contains Prosite PS00028: Zinc finger,
           C2H2 type, domain
          Length = 828

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +2

Query: 422 VGIPIYAWKGETDDEYIWCIEQTLIFPDGKPLN 520
           +G+P  +WK   ++E++W +   L   D   +N
Sbjct: 261 IGVPYDSWKNSEEEEFMWDMHSRLSETDVATIN 293


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,049,933
Number of Sequences: 28952
Number of extensions: 297566
Number of successful extensions: 773
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)