Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11e12
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798     30   1.5  
01_06_1171 - 35089719-35090336,35090596-35090715,35090851-350911...    29   4.6  
01_06_0646 - 30832201-30832838,30833643-30833838,30833975-308341...    29   4.6  
01_02_0048 - 10626467-10627498,10628522-10628617                       28   6.1  
03_05_0883 + 28483429-28484385,28485090-28485398                       28   8.1  
02_05_0331 + 28003454-28003912,28004649-28004873,28005017-280053...    28   8.1  
01_01_0840 - 6557931-6558377                                           28   8.1  

>03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798
          Length = 268

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -1

Query: 355 DADTGVASVTFSASGFTFLSSVLVSTAEVVF 263
           DAD GVA+V  +  G  F S V ++ AE VF
Sbjct: 53  DADDGVAAVVLAGRGRAFCSGVDLTAAEEVF 83


>01_06_1171 -
           35089719-35090336,35090596-35090715,35090851-35091108,
           35091934-35092563
          Length = 541

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -1

Query: 613 GSMCVGASVDLASSDFGVVASSFLASVEELVSLFLAASVWCSGTILVGSETG 458
           G  CVG + +   S+  V A++      E   L   ++VWC G +L+   TG
Sbjct: 319 GYGCVGFNTEEEISNASVAAANLSVETLEKGVLTPKSNVWCFGVVLLELITG 370


>01_06_0646 -
           30832201-30832838,30833643-30833838,30833975-30834126,
           30834258-30834303,30834992-30835216,30835374-30835414,
           30835705-30835834,30835951-30836019,30836254-30836307,
           30836389-30836547,30836854-30836991,30837079-30837141,
           30837225-30837264,30837369-30837415,30838062-30838373
          Length = 769

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 129 LAMCIALPAEQSGAQLGTTVPVPHDIPQAPGKPEENATAV 248
           +A  I LP E+  A LG  V   HD P APG   +    V
Sbjct: 1   MASHIILPKEEEAA-LGVAVEEDHDSPAAPGYQHQQGPPV 39


>01_02_0048 - 10626467-10627498,10628522-10628617
          Length = 375

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +3

Query: 129 LAMCIALPAEQSGAQLGTTVPVPHDIPQAPGKPEENATAVQPTKQN 266
           LA+ + + AE   A  G   P P  + QAP  PE+ A     T  N
Sbjct: 228 LAVALGVDAEVPSANHGADEPEPLPMLQAPPPPEDMAPESSSTATN 273


>03_05_0883 + 28483429-28484385,28485090-28485398
          Length = 421

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -1

Query: 688 IAKRPRVSMIPPTKLGPSNALACTVGSMCVGASVDLASSDFGVVASS 548
           + +RPR     P   G  +A A TV +    A  DL + + G+V  +
Sbjct: 95  LKRRPRTPRTKPGGGGKHDASAATVAAAAASAVPDLEAEESGIVGDT 141


>02_05_0331 +
           28003454-28003912,28004649-28004873,28005017-28005370,
           28005673-28005702,28006869-28007342
          Length = 513

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -1

Query: 676 PRVSMIPPTKLGPSNALACTVGSMCVGASVDLASSDFGVVA 554
           PR   +P   L  S  L    G++CVGA+  L   D G  A
Sbjct: 82  PRAPPVPRRALAAS--LLAAAGALCVGAAASLVPEDSGWAA 120


>01_01_0840 - 6557931-6558377
          Length = 148

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 667 SMIPPTKLGPSNALACTVGSMCVGASVDLASSDFG 563
           SM PP    PS+ L C V      ++ DLASS  G
Sbjct: 19  SMPPPLLCLPSSPLPCVVEVAMTSSTPDLASSSTG 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,722,486
Number of Sequences: 37544
Number of extensions: 246474
Number of successful extensions: 739
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)