Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11e10
(643 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 220 1e-58
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 41 2e-04
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 35 0.011
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 32 0.081
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 32 0.081
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 31 0.11
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 31 0.11
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 31 0.19
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo... 27 1.7
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 27 2.3
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 27 3.0
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 3.0
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 27 3.0
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 26 5.3
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 5.3
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac... 25 7.0
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 25 7.0
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 25 9.3
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 25 9.3
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces... 25 9.3
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 9.3
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 220 bits (538), Expect = 1e-58
Identities = 107/139 (76%), Positives = 117/139 (84%)
Frame = +1
Query: 226 LDVTKLSALSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLG 405
LD+++LS + P +ISRQATINIGTIGHVAHGKSTVVKAISGV TVRFKNELERNITIKLG
Sbjct: 5 LDISELSPIHPAIISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLG 64
Query: 406 YANAKIYQCDNPKCPRPTSFISGGSSKDDSFPCLRPACTGRFQLVRHVSFVDCPGHDILM 585
YANAKIY+C N +CPRP + S S+K+D PC C LVRHVSFVDCPGHDILM
Sbjct: 65 YANAKIYKCSNEECPRPGCYRSYSSNKEDHPPC--EICNSPMNLVRHVSFVDCPGHDILM 122
Query: 586 ATMLNGAAVMDAALLLIAG 642
ATMLNGAAVMDAALLLIAG
Sbjct: 123 ATMLNGAAVMDAALLLIAG 141
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 40.7 bits (91), Expect = 2e-04
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +1
Query: 541 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIA 639
RH + VDCPGH + M+ GAA MD A+++++
Sbjct: 116 RHYAHVDCPGHADYIKNMITGAATMDGAIIVVS 148
Score = 36.3 bits (80), Expect = 0.004
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = +1
Query: 265 ISRQATINIGTIGHVAHGKSTVVKAIS 345
+ ++ +NIGTIGHV HGK+T+ AI+
Sbjct: 48 VRKKPHVNIGTIGHVDHGKTTLTAAIT 74
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 34.7 bits (76), Expect = 0.011
Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Frame = +1
Query: 190 TQSNLHQQDLSKLDVTKLSALSPEVISRQATINIGT-IGHVAHGKSTVVKAISGVQTVRF 366
T +++H Q L++ ++ K SA++ S ++ I A+GK+ ++ A Q + +
Sbjct: 825 TMTDVHDQKLAERELQKQSAIAANENSYRSLAEASPQIVFAANGKNGIIYA--NAQWLSY 882
Query: 367 KNELERNITIKLGYANAKIYQCDNPKCPRPTSFISGGSSKDDS 495
L ++ LG+ +A +Y D KC P S +++D+S
Sbjct: 883 SG-LSLESSLGLGFLSA-VYHADRKKCLLPESLEGTFNNQDES 923
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 31.9 bits (69), Expect = 0.081
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 544 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAG 642
+V+ +D PGH + M+ G + D A+L+I G
Sbjct: 86 NVTVIDAPGHRDFIKNMITGTSQADCAILIIGG 118
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 31.9 bits (69), Expect = 0.081
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 544 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAG 642
+V+ +D PGH + M+ G + D A+L+I G
Sbjct: 86 NVTVIDAPGHRDFIKNMITGTSQADCAILIIGG 118
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 31.5 bits (68), Expect = 0.11
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 544 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAG 642
+V+ +D PGH + M+ G + D A+L+I G
Sbjct: 86 NVTVIDAPGHRDFIKNMITGTSQADCAVLIIGG 118
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 31.5 bits (68), Expect = 0.11
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 541 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIA 639
R S +D PGH + M+NGA+ D +L+I+
Sbjct: 316 RRFSLLDAPGHKGYVTNMINGASQADIGVLVIS 348
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 30.7 bits (66), Expect = 0.19
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 541 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAG 642
+ ++F+D PGH A GA + D +L++AG
Sbjct: 220 KFITFLDTPGHMAFEAMRKRGANIADIVVLVVAG 253
>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 472
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 301 GHVAHGKSTVVKAISGVQT 357
GH++HG ST KAIS V T
Sbjct: 139 GHLSHGFSTPQKAISAVST 157
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 457 TSFISGGSSKDDSFPCLRPACTGRFQ 534
+ FI G + DD CL P C GR +
Sbjct: 18 SGFIKAGFAGDDIPKCLFPTCVGRIK 43
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 26.6 bits (56), Expect = 3.0
Identities = 25/117 (21%), Positives = 47/117 (40%)
Frame = +1
Query: 286 NIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYQCDNPKCPRPTSF 465
N+ I HV HGKST+ ++ VQ + + + + + + + + T+
Sbjct: 21 NMSVIAHVDHGKSTLTDSL--VQKAGIISAAKAG---DARFMDTRADEQERGVTIKSTAI 75
Query: 466 ISGGSSKDDSFPCLRPACTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLI 636
DD ++ G L V+ +D PGH + + V D AL+++
Sbjct: 76 SLFAEMTDDDMKDMKEPADGTDFL---VNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 26.6 bits (56), Expect = 3.0
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +1
Query: 343 SGVQTVRFKNELERNITIKLGYANAKIYQCDNPKCPRPTSFISGGSSKDDSFPCLRPA 516
S QT + L + + +++A + P+PT F SGG SK F PA
Sbjct: 207 SNTQTANTTSNLR--VPVNASWSDAGRKEKSQENKPKPTPFGSGGPSKPTPFESHGPA 262
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 26.6 bits (56), Expect = 3.0
Identities = 25/117 (21%), Positives = 47/117 (40%)
Frame = +1
Query: 286 NIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYQCDNPKCPRPTSF 465
N+ I HV HGKST+ ++ VQ + + + + + + + + T+
Sbjct: 21 NMSVIAHVDHGKSTLTDSL--VQKAGIISAAKAG---DARFMDTRADEQERGVTIKSTAI 75
Query: 466 ISGGSSKDDSFPCLRPACTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLI 636
DD ++ G L V+ +D PGH + + V D AL+++
Sbjct: 76 SLFAEMTDDDMKDMKEPADGTDFL---VNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 25.8 bits (54), Expect = 5.3
Identities = 20/63 (31%), Positives = 26/63 (41%)
Frame = +1
Query: 310 AHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYQCDNPKCPRPTSFISGGSSKD 489
A G V+ S Q F +E+ T+KL Y N + + P PR T S D
Sbjct: 396 ARGWCNVLDDESSQQNQNFSSEIGIFQTVKLWYLNESKFDTNPP--PRSTMSCRKLSGID 453
Query: 490 DSF 498
D F
Sbjct: 454 DPF 456
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 250 LSPEVISRQATINIGTIGHVAHGKSTVVKAIS-GVQTVRFKNELERNITIKL 402
L P ++S++ T+N ++ H VVK + GV V++ L + +TI++
Sbjct: 2568 LYPSILSQEDTMNDNSLLPTFHSMVAVVKNDTYGVTYVKYATILLQELTIEI 2619
>SPBC1539.09c |trp1||anthranilate synthase component
II|Schizosaccharomyces pombe|chr 2|||Manual
Length = 759
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +1
Query: 199 NLHQQDLSKLDVTKLSALSPEVISRQATINIGTIGHVAHGKSTVVKAI 342
NLH ++ +KL+ + P+ + A I + VAH S V A+
Sbjct: 452 NLHSFEVDLSTTSKLAEMVPDDVILAALSGISSPADVAHYSSQGVSAV 499
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +1
Query: 541 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAG 642
+ ++ +D PGH + AV+D A+ +I G
Sbjct: 93 QRINLIDTPGHADFTFEVERSVAVLDGAVAIIDG 126
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 299 IVPMLIVACLDMTSGERADNFVTSNLD 219
++ +L + C D GE+ D TSN+D
Sbjct: 1137 VLDVLELVCYDWDMGEKPDVLGTSNID 1163
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 559 DCPGHDILMATMLNGAAVMDAALLLI 636
D PGH ++ M+ GA+ D A+L++
Sbjct: 261 DAPGHRDFISGMIAGASSADFAVLVV 286
>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 336
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 404 PNLIVIFLSNSFLNLTVCTPEIA 336
P+LI++ ++ F L +CTP +A
Sbjct: 8 PSLILLVIAIVFFVLAICTPPLA 30
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 292 GTIGHVAHGKSTVVKAISGVQTVRF 366
G +GH GKST+++AI + F
Sbjct: 474 GVVGHNGCGKSTLLRAIGDYKVENF 498
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,913
Number of Sequences: 5004
Number of extensions: 50028
Number of successful extensions: 148
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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