Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11e10
(643 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 89 2e-18
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 44 1e-04
SB_43105| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.34
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 31 0.60
SB_20212| Best HMM Match : Apolipoprotein (HMM E-Value=3.5) 31 0.80
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 31 0.80
SB_53221| Best HMM Match : zf-CCHC (HMM E-Value=0.061) 31 1.1
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 31 1.1
SB_47486| Best HMM Match : Mic1 (HMM E-Value=7.8) 29 2.4
SB_4173| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_5817| Best HMM Match : DpmII (HMM E-Value=1.5) 28 5.6
SB_42271| Best HMM Match : DUF229 (HMM E-Value=0) 27 9.8
SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20) 27 9.8
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 89.4 bits (212), Expect = 2e-18
Identities = 42/50 (84%), Positives = 46/50 (92%)
Frame = +1
Query: 274 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKI 423
+A+ TIGHVAHGKSTVVKA+SGVQTVRFKNELERNITIKLGYANAK+
Sbjct: 20 RASAQARTIGHVAHGKSTVVKALSGVQTVRFKNELERNITIKLGYANAKV 69
Score = 62.9 bits (146), Expect = 2e-10
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = +1
Query: 556 VDCPGHDILMATMLNGAAVMDAALLLIAG 642
VDCPGHDILMATMLNGAAVMDAALLLIAG
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIAG 97
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 44.0 bits (99), Expect = 1e-04
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Frame = +1
Query: 250 LSPEVISRQATINIGTIGHVAHGKSTVVKAIS-GVQTVRF-KN--ELERNITIKLGYANA 417
++ ++ R NIG +GHV GK+++ KA+S T F KN ER IT+ LG+++
Sbjct: 25 MAEKIKERILNFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSF 84
Query: 418 KIYQCDNPKCPRPTSFISGGSSKDDSFPCLRPACTGRFQLVRHVSFVDCPGHDILMATML 597
++ P S GS D + ++ VDCPGH L+ T++
Sbjct: 85 QV--------ALPEHLRSAGSEHD----------------LLQMTLVDCPGHASLIKTII 120
Query: 598 NGAAVM 615
GA ++
Sbjct: 121 GGAQII 126
>SB_43105| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 32.3 bits (70), Expect = 0.34
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +1
Query: 199 NLHQQDLSKLDVTKLSALSPEVISRQATIN--IGTIGHV--AHGKSTVVKAISGVQTV 360
++++QDL+KL+V + + R TIN I T+GHV H + K G+ TV
Sbjct: 67 DINEQDLAKLEVAAIEYCHANKLFRPYTINPTIWTLGHVLPVHARDVFSKYQQGLLTV 124
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 31.5 bits (68), Expect = 0.60
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 526 RFQLVRHV-SFVDCPGHDILMATMLNGAAVMDAALLLI 636
RFQ V + +D PGH + M+ GAA D A+L++
Sbjct: 7 RFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVV 44
>SB_20212| Best HMM Match : Apolipoprotein (HMM E-Value=3.5)
Length = 424
Score = 31.1 bits (67), Expect = 0.80
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +1
Query: 199 NLHQQDLSKLDVTKLSALSPEVISRQATIN--IGTIGHV--AHGKSTVVKAISGVQTV 360
++++QD++KL+V + +S TIN I T+GHV H + K G+ TV
Sbjct: 307 DINEQDIAKLEVAAIEYCHANKLSLPYTINPTIWTLGHVLPVHARDVFSKYQQGLLTV 364
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 31.1 bits (67), Expect = 0.80
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 547 VSFVDCPGHDILMATMLNGAAVMDAALLLIA 639
++F+D PGH+ A GA V D ++++A
Sbjct: 140 IAFLDTPGHEAFTAMRARGAQVTDLVIIVVA 170
>SB_53221| Best HMM Match : zf-CCHC (HMM E-Value=0.061)
Length = 410
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 304 HVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANA 417
H + K+T +K G QTVR K + RN+ G NA
Sbjct: 34 HQRYRKTTTLKMTRGAQTVRTKGAITRNMKKHEGVGNA 71
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 541 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIA 639
+H + +D PGH + M++GA D +L+I+
Sbjct: 222 KHFTLLDAPGHKSFVPNMISGATQADLGVLVIS 254
>SB_47486| Best HMM Match : Mic1 (HMM E-Value=7.8)
Length = 263
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +1
Query: 199 NLHQQDLSKLDVTKLSALSPEVISRQATIN--IGTIGHV--AHGKSTVVKAISGVQTV 360
++++QDL+KL+V + + TIN I T+GHV H + K G+ TV
Sbjct: 202 DINEQDLAKLEVAAIEYCHANKLFLPYTINPTIWTLGHVLPVHARDVFSKYQQGLLTV 259
>SB_4173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 743
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = +2
Query: 119 LKHFANSNIIGLTQPLWLRTKGELLNQTCISKTYLNWMSQNYLLSLPKSYQ 271
L F + + +PLWL T G CI + M+ NYL S KSYQ
Sbjct: 426 LNGFKSPPVDHYARPLWLHTGG-----MCIGGQFHVDMAVNYLKSFIKSYQ 471
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 547 VSFVDCPGHDILMATMLNGAAVMDAALLLIA 639
++F+D PGH + GA V D +L++A
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVA 108
>SB_5817| Best HMM Match : DpmII (HMM E-Value=1.5)
Length = 529
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/64 (23%), Positives = 30/64 (46%)
Frame = +1
Query: 184 RTTQSNLHQQDLSKLDVTKLSALSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVR 363
R + ++ QQ S + + K + E +++G + K + K +SG+Q +
Sbjct: 207 RFIKPDVQQQANSPIKLAKFDLSNKENYLDAKKVDVGFVAQAKIRKLLLDKKVSGLQAFQ 266
Query: 364 FKNE 375
F+NE
Sbjct: 267 FRNE 270
>SB_42271| Best HMM Match : DUF229 (HMM E-Value=0)
Length = 591
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 113 FFLKHFANSNIIGLTQPLWLRTKGELLNQTCISKTYLNWMSQNYLLSLPKSY 268
F LK F + ++ W+ + + + C + ++ M+ NYLLSL ++Y
Sbjct: 345 FRLKGFRDPPTDHYSRYYWMEAENYIRKEFCSNNQAMHNMTFNYLLSLFRTY 396
>SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20)
Length = 1243
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +1
Query: 457 TSFISGGSSKDDSFPCLRPAC-TGRFQLVRHVSF 555
T + G + DD P L AC G + RH+ +
Sbjct: 100 TDLVKGSADADDELPFLHVACQNGHLSITRHLIY 133
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,040,586
Number of Sequences: 59808
Number of extensions: 379883
Number of successful extensions: 3028
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3024
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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