Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11e10
(643 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 233 1e-61
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 47 1e-05
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 47 1e-05
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 40 0.002
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 40 0.002
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 40 0.002
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 36 0.033
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 36 0.033
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 33 0.17
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 31 0.53
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 31 0.70
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 30 1.2
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 30 1.2
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 30 1.2
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 30 1.2
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 28 4.9
AC024765-2|AAF60523.3| 345|Caenorhabditis elegans Hypothetical ... 27 8.6
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 233 bits (569), Expect = 1e-61
Identities = 116/160 (72%), Positives = 126/160 (78%), Gaps = 1/160 (0%)
Frame = +1
Query: 166 MASN-EGRTTQSNLHQQDLSKLDVTKLSALSPEVISRQATINIGTIGHVAHGKSTVVKAI 342
MAS E QS L +QDL K+ V L+ L+ EVISRQATINIGTIGHVAHGKST+VKA
Sbjct: 1 MASEAEKDKCQSWLAKQDLDKVGVDNLNPLTEEVISRQATINIGTIGHVAHGKSTLVKAF 60
Query: 343 SGVQTVRFKNELERNITIKLGYANAKIYQCDNPKCPRPTSFISGGSSKDDSFPCLRPACT 522
SGV TV+FK ELERNITIKLGYANAKIY+C N +CPRP + S GSS D FPC R C
Sbjct: 61 SGVHTVKFKRELERNITIKLGYANAKIYRCSNQECPRPGCYRSAGSSTPDRFPCERAGCG 120
Query: 523 GRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAG 642
G F VRHVSFVDCPGHDILMATMLNGAAVMDAA LL+AG
Sbjct: 121 GEFTCVRHVSFVDCPGHDILMATMLNGAAVMDAAFLLVAG 160
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 47.2 bits (107), Expect = 1e-05
Identities = 38/119 (31%), Positives = 54/119 (45%)
Frame = +1
Query: 283 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYQCDNPKCPRPTS 462
+N+GTIGH+ HGK+T+ AI+ VQ K G+ AK + D
Sbjct: 46 VNVGTIGHIDHGKTTLTSAITRVQA-------------KKGF--AKHIKFDE-------- 82
Query: 463 FISGGSSKDDSFPCLRPACTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIA 639
I G + + A G +R S DCPGH + M+ G + MD A+L+IA
Sbjct: 83 -IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIA 140
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 47.2 bits (107), Expect = 1e-05
Identities = 38/119 (31%), Positives = 54/119 (45%)
Frame = +1
Query: 283 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYQCDNPKCPRPTS 462
+N+GTIGH+ HGK+T+ AI+ VQ K G+ AK + D
Sbjct: 46 VNVGTIGHIDHGKTTLTSAITRVQA-------------KKGF--AKHIKFDE-------- 82
Query: 463 FISGGSSKDDSFPCLRPACTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIA 639
I G + + A G +R S DCPGH + M+ G + MD A+L+IA
Sbjct: 83 -IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIA 140
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +1
Query: 541 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIA 639
RH + +DCPGH + M+ GAA M+ A+L++A
Sbjct: 112 RHYAHIDCPGHADYIKNMITGAAQMEGAILVVA 144
Score = 35.5 bits (78), Expect = 0.033
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +1
Query: 283 INIGTIGHVAHGKSTVVKAISGV 351
+N+GTIGHV HGK+T+ AI+ +
Sbjct: 50 LNVGTIGHVDHGKTTLTSAITKI 72
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +1
Query: 541 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIA 639
RH + +DCPGH + M+ GAA M+ A+L++A
Sbjct: 113 RHYAHIDCPGHADYIKNMITGAAQMEGAILVVA 145
Score = 35.5 bits (78), Expect = 0.033
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +1
Query: 283 INIGTIGHVAHGKSTVVKAISGV 351
+N+GTIGHV HGK+T+ AI+ +
Sbjct: 51 LNVGTIGHVDHGKTTLTSAITKI 73
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +1
Query: 541 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIA 639
RH + +DCPGH + M+ GAA M+ A+L++A
Sbjct: 113 RHYAHIDCPGHADYIKNMITGAAQMEGAILVVA 145
Score = 35.5 bits (78), Expect = 0.033
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +1
Query: 283 INIGTIGHVAHGKSTVVKAISGV 351
+N+GTIGHV HGK+T+ AI+ +
Sbjct: 51 LNVGTIGHVDHGKTTLTSAITKI 73
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 35.5 bits (78), Expect = 0.033
Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 8/168 (4%)
Frame = +1
Query: 157 TTIMASNEGRTTQSNLHQ-QDLSKLDVTKLSALSPEVISRQATINIGTIGHVAHGKSTVV 333
T S+E T +Q Q+++K P V + IN+ +GHV GKST++
Sbjct: 129 TVSRPSSEVDLTSFRRNQLQNIAKAPSVARKTPKPRVADKDL-INLIVVGHVDAGKSTLM 187
Query: 334 -------KAISGVQTVRFKNELERNITIKLGYANAKIYQCDNPKCPRPTSFISGGSSKDD 492
+ + +FK+E RN K +A A + + R + G +S +
Sbjct: 188 GHLLHDLEVVDSRTIDKFKHEAARNG--KASFAYAWVLDETEEERERGVTMDIGRTSFET 245
Query: 493 SFPCLRPACTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLI 636
S R + +D PGH ++ M+ G + DAA+L++
Sbjct: 246 SH--------------RRIVLLDAPGHKDFISNMITGTSQADAAILVV 279
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 35.5 bits (78), Expect = 0.033
Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 8/168 (4%)
Frame = +1
Query: 157 TTIMASNEGRTTQSNLHQ-QDLSKLDVTKLSALSPEVISRQATINIGTIGHVAHGKSTVV 333
T S+E T +Q Q+++K P V + IN+ +GHV GKST++
Sbjct: 147 TVSRPSSEVDLTSFRRNQLQNIAKAPSVARKTPKPRVADKDL-INLIVVGHVDAGKSTLM 205
Query: 334 -------KAISGVQTVRFKNELERNITIKLGYANAKIYQCDNPKCPRPTSFISGGSSKDD 492
+ + +FK+E RN K +A A + + R + G +S +
Sbjct: 206 GHLLHDLEVVDSRTIDKFKHEAARNG--KASFAYAWVLDETEEERERGVTMDIGRTSFET 263
Query: 493 SFPCLRPACTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLI 636
S R + +D PGH ++ M+ G + DAA+L++
Sbjct: 264 SH--------------RRIVLLDAPGHKDFISNMITGTSQADAAILVV 297
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 33.1 bits (72), Expect = 0.17
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 541 RHVSFVDCPGHDILMATMLNGAAVMDAALLLI 636
R ++ +DCPGH L+ +L + V D A+++I
Sbjct: 72 RRLALIDCPGHSGLIRAVLAASTVFDMAIVII 103
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 256 PEVISRQATINIGTIGHVAHGKSTVVKAIS 345
P S +N+G +GHV GK+T+ + I+
Sbjct: 5 PSTSSSVGPLNLGILGHVDSGKTTLTRRIA 34
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 31.5 bits (68), Expect = 0.53
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 541 RHVSFVDCPGHDILMATMLNGAAVMDAALLL 633
R ++ +DCPGH L+ +L + V D A+++
Sbjct: 72 RRLALIDCPGHSGLIRAVLAASTVFDMAIVI 102
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 256 PEVISRQATINIGTIGHVAHGKSTVVKAIS 345
P S +N+G +GHV GK+T+ + I+
Sbjct: 5 PSTSSSVGPLNLGILGHVDSGKTTLTRRIA 34
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 541 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIA 639
RH + +D PGH + M+ GA D A+L+I+
Sbjct: 187 RHFTILDAPGHKSFVPNMIVGANQADLAVLVIS 219
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +1
Query: 544 HVSFVDCPGHDILMATMLNGAAVMDAALLLIA 639
+++ +D PGH + M+ G + D A+L++A
Sbjct: 86 YITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +1
Query: 544 HVSFVDCPGHDILMATMLNGAAVMDAALLLIA 639
+++ +D PGH + M+ G + D A+L++A
Sbjct: 86 YITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +1
Query: 544 HVSFVDCPGHDILMATMLNGAAVMDAALLLIA 639
+++ +D PGH + M+ G + D A+L++A
Sbjct: 86 YITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +1
Query: 544 HVSFVDCPGHDILMATMLNGAAVMDAALLLIA 639
+++ +D PGH + M+ G + D A+L++A
Sbjct: 86 YITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 541 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIA 639
R V+F+D PGH + GA D +L++A
Sbjct: 204 RRVTFLDTPGHAAFASMRARGAKGADIVVLVVA 236
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 253 SPEVISRQATINIGTIGHVAHGKSTVVKAISGVQ 354
SP+ + R+ I + +GHV HGK+T++ A+ Q
Sbjct: 148 SPKDLERRPPI-VTIMGHVDHGKTTLLDAMRNSQ 180
>AC024765-2|AAF60523.3| 345|Caenorhabditis elegans Hypothetical
protein Y39A3CR.6 protein.
Length = 345
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 442 KCPRPTSFISGGSSKDDSFPCLRPACTGR 528
K P+SF+S GSS + P ++P T R
Sbjct: 240 KVSSPSSFLSPGSSTSSTVPNVKPTVTRR 268
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,987,319
Number of Sequences: 27780
Number of extensions: 282471
Number of successful extensions: 712
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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