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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11e10
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025716-9|AAK39619.1|  469|Caenorhabditis elegans Hypothetical ...   233   1e-61
U80437-9|AAN84843.1|  439|Caenorhabditis elegans Tu elongation f...    47   1e-05
AB010028-1|BAA31345.1|  439|Caenorhabditis elegans mitochondrial...    47   1e-05
D38472-1|BAA07492.1|  495|Caenorhabditis elegans elongation fact...    40   0.002
D38471-1|BAA07491.1|  496|Caenorhabditis elegans elongation fact...    40   0.002
AC024859-25|AAK29979.1|  496|Caenorhabditis elegans Tu elongatio...    40   0.002
Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical pr...    36   0.033
Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical pr...    36   0.033
Z99709-7|CAB16862.2|  500|Caenorhabditis elegans Hypothetical pr...    33   0.17 
Z99709-6|CAB16863.1|  459|Caenorhabditis elegans Hypothetical pr...    31   0.53 
Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical pr...    31   0.70 
U51994-9|AAO21383.1|  267|Caenorhabditis elegans Elongation fact...    30   1.2  
U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation fact...    30   1.2  
U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation fact...    30   1.2  
U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation fact...    30   1.2  
Z70780-15|CAA94822.2|  702|Caenorhabditis elegans Hypothetical p...    28   4.9  
AC024765-2|AAF60523.3|  345|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AC025716-9|AAK39619.1|  469|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.8 protein.
          Length = 469

 Score =  233 bits (569), Expect = 1e-61
 Identities = 116/160 (72%), Positives = 126/160 (78%), Gaps = 1/160 (0%)
 Frame = +1

Query: 166 MASN-EGRTTQSNLHQQDLSKLDVTKLSALSPEVISRQATINIGTIGHVAHGKSTVVKAI 342
           MAS  E    QS L +QDL K+ V  L+ L+ EVISRQATINIGTIGHVAHGKST+VKA 
Sbjct: 1   MASEAEKDKCQSWLAKQDLDKVGVDNLNPLTEEVISRQATINIGTIGHVAHGKSTLVKAF 60

Query: 343 SGVQTVRFKNELERNITIKLGYANAKIYQCDNPKCPRPTSFISGGSSKDDSFPCLRPACT 522
           SGV TV+FK ELERNITIKLGYANAKIY+C N +CPRP  + S GSS  D FPC R  C 
Sbjct: 61  SGVHTVKFKRELERNITIKLGYANAKIYRCSNQECPRPGCYRSAGSSTPDRFPCERAGCG 120

Query: 523 GRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAG 642
           G F  VRHVSFVDCPGHDILMATMLNGAAVMDAA LL+AG
Sbjct: 121 GEFTCVRHVSFVDCPGHDILMATMLNGAAVMDAAFLLVAG 160


>U80437-9|AAN84843.1|  439|Caenorhabditis elegans Tu elongation
           factor (ef-tu), mitochondrialprotein 2 protein.
          Length = 439

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 38/119 (31%), Positives = 54/119 (45%)
 Frame = +1

Query: 283 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYQCDNPKCPRPTS 462
           +N+GTIGH+ HGK+T+  AI+ VQ              K G+  AK  + D         
Sbjct: 46  VNVGTIGHIDHGKTTLTSAITRVQA-------------KKGF--AKHIKFDE-------- 82

Query: 463 FISGGSSKDDSFPCLRPACTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIA 639
            I  G  +      +  A  G    +R  S  DCPGH   +  M+ G + MD A+L+IA
Sbjct: 83  -IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIA 140


>AB010028-1|BAA31345.1|  439|Caenorhabditis elegans mitochondrial
           elongation factorTu homologue protein.
          Length = 439

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 38/119 (31%), Positives = 54/119 (45%)
 Frame = +1

Query: 283 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYQCDNPKCPRPTS 462
           +N+GTIGH+ HGK+T+  AI+ VQ              K G+  AK  + D         
Sbjct: 46  VNVGTIGHIDHGKTTLTSAITRVQA-------------KKGF--AKHIKFDE-------- 82

Query: 463 FISGGSSKDDSFPCLRPACTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIA 639
            I  G  +      +  A  G    +R  S  DCPGH   +  M+ G + MD A+L+IA
Sbjct: 83  -IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIA 140


>D38472-1|BAA07492.1|  495|Caenorhabditis elegans elongation factor
           Tu homologueprecursor protein.
          Length = 495

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = +1

Query: 541 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIA 639
           RH + +DCPGH   +  M+ GAA M+ A+L++A
Sbjct: 112 RHYAHIDCPGHADYIKNMITGAAQMEGAILVVA 144



 Score = 35.5 bits (78), Expect = 0.033
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = +1

Query: 283 INIGTIGHVAHGKSTVVKAISGV 351
           +N+GTIGHV HGK+T+  AI+ +
Sbjct: 50  LNVGTIGHVDHGKTTLTSAITKI 72


>D38471-1|BAA07491.1|  496|Caenorhabditis elegans elongation factor
           Tu homologueprecursor protein.
          Length = 496

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = +1

Query: 541 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIA 639
           RH + +DCPGH   +  M+ GAA M+ A+L++A
Sbjct: 113 RHYAHIDCPGHADYIKNMITGAAQMEGAILVVA 145



 Score = 35.5 bits (78), Expect = 0.033
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = +1

Query: 283 INIGTIGHVAHGKSTVVKAISGV 351
           +N+GTIGHV HGK+T+  AI+ +
Sbjct: 51  LNVGTIGHVDHGKTTLTSAITKI 73


>AC024859-25|AAK29979.1|  496|Caenorhabditis elegans Tu elongation
           factor (ef-tu), mitochondrialprotein 1 protein.
          Length = 496

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = +1

Query: 541 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIA 639
           RH + +DCPGH   +  M+ GAA M+ A+L++A
Sbjct: 113 RHYAHIDCPGHADYIKNMITGAAQMEGAILVVA 145



 Score = 35.5 bits (78), Expect = 0.033
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = +1

Query: 283 INIGTIGHVAHGKSTVVKAISGV 351
           +N+GTIGHV HGK+T+  AI+ +
Sbjct: 51  LNVGTIGHVDHGKTTLTSAITKI 73


>Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical
           protein K07A12.4b protein.
          Length = 592

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 8/168 (4%)
 Frame = +1

Query: 157 TTIMASNEGRTTQSNLHQ-QDLSKLDVTKLSALSPEVISRQATINIGTIGHVAHGKSTVV 333
           T    S+E   T    +Q Q+++K          P V  +   IN+  +GHV  GKST++
Sbjct: 129 TVSRPSSEVDLTSFRRNQLQNIAKAPSVARKTPKPRVADKDL-INLIVVGHVDAGKSTLM 187

Query: 334 -------KAISGVQTVRFKNELERNITIKLGYANAKIYQCDNPKCPRPTSFISGGSSKDD 492
                  + +      +FK+E  RN   K  +A A +      +  R  +   G +S + 
Sbjct: 188 GHLLHDLEVVDSRTIDKFKHEAARNG--KASFAYAWVLDETEEERERGVTMDIGRTSFET 245

Query: 493 SFPCLRPACTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLI 636
           S               R +  +D PGH   ++ M+ G +  DAA+L++
Sbjct: 246 SH--------------RRIVLLDAPGHKDFISNMITGTSQADAAILVV 279


>Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical
           protein K07A12.4a protein.
          Length = 610

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 8/168 (4%)
 Frame = +1

Query: 157 TTIMASNEGRTTQSNLHQ-QDLSKLDVTKLSALSPEVISRQATINIGTIGHVAHGKSTVV 333
           T    S+E   T    +Q Q+++K          P V  +   IN+  +GHV  GKST++
Sbjct: 147 TVSRPSSEVDLTSFRRNQLQNIAKAPSVARKTPKPRVADKDL-INLIVVGHVDAGKSTLM 205

Query: 334 -------KAISGVQTVRFKNELERNITIKLGYANAKIYQCDNPKCPRPTSFISGGSSKDD 492
                  + +      +FK+E  RN   K  +A A +      +  R  +   G +S + 
Sbjct: 206 GHLLHDLEVVDSRTIDKFKHEAARNG--KASFAYAWVLDETEEERERGVTMDIGRTSFET 263

Query: 493 SFPCLRPACTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLI 636
           S               R +  +D PGH   ++ M+ G +  DAA+L++
Sbjct: 264 SH--------------RRIVLLDAPGHKDFISNMITGTSQADAAILVV 297


>Z99709-7|CAB16862.2|  500|Caenorhabditis elegans Hypothetical
           protein C47B2.7b protein.
          Length = 500

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 541 RHVSFVDCPGHDILMATMLNGAAVMDAALLLI 636
           R ++ +DCPGH  L+  +L  + V D A+++I
Sbjct: 72  RRLALIDCPGHSGLIRAVLAASTVFDMAIVII 103



 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 256 PEVISRQATINIGTIGHVAHGKSTVVKAIS 345
           P   S    +N+G +GHV  GK+T+ + I+
Sbjct: 5   PSTSSSVGPLNLGILGHVDSGKTTLTRRIA 34


>Z99709-6|CAB16863.1|  459|Caenorhabditis elegans Hypothetical
           protein C47B2.7a protein.
          Length = 459

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 541 RHVSFVDCPGHDILMATMLNGAAVMDAALLL 633
           R ++ +DCPGH  L+  +L  + V D A+++
Sbjct: 72  RRLALIDCPGHSGLIRAVLAASTVFDMAIVI 102



 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 256 PEVISRQATINIGTIGHVAHGKSTVVKAIS 345
           P   S    +N+G +GHV  GK+T+ + I+
Sbjct: 5   PSTSSSVGPLNLGILGHVDSGKTTLTRRIA 34


>Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical
           protein H19N07.1 protein.
          Length = 532

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 541 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIA 639
           RH + +D PGH   +  M+ GA   D A+L+I+
Sbjct: 187 RHFTILDAPGHKSFVPNMIVGANQADLAVLVIS 219


>U51994-9|AAO21383.1|  267|Caenorhabditis elegans Elongation factor
           protein 4, isoformc protein.
          Length = 267

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 544 HVSFVDCPGHDILMATMLNGAAVMDAALLLIA 639
           +++ +D PGH   +  M+ G +  D A+L++A
Sbjct: 86  YITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117


>U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation factor
           protein 4, isoformd protein.
          Length = 429

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 544 HVSFVDCPGHDILMATMLNGAAVMDAALLLIA 639
           +++ +D PGH   +  M+ G +  D A+L++A
Sbjct: 86  YITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117


>U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation factor
           protein 4, isoforma protein.
          Length = 463

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 544 HVSFVDCPGHDILMATMLNGAAVMDAALLLIA 639
           +++ +D PGH   +  M+ G +  D A+L++A
Sbjct: 86  YITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117


>U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation factor
           protein 3 protein.
          Length = 463

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 544 HVSFVDCPGHDILMATMLNGAAVMDAALLLIA 639
           +++ +D PGH   +  M+ G +  D A+L++A
Sbjct: 86  YITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117


>Z70780-15|CAA94822.2|  702|Caenorhabditis elegans Hypothetical
           protein F46B6.6a protein.
          Length = 702

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 541 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIA 639
           R V+F+D PGH    +    GA   D  +L++A
Sbjct: 204 RRVTFLDTPGHAAFASMRARGAKGADIVVLVVA 236



 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +1

Query: 253 SPEVISRQATINIGTIGHVAHGKSTVVKAISGVQ 354
           SP+ + R+  I +  +GHV HGK+T++ A+   Q
Sbjct: 148 SPKDLERRPPI-VTIMGHVDHGKTTLLDAMRNSQ 180


>AC024765-2|AAF60523.3|  345|Caenorhabditis elegans Hypothetical
           protein Y39A3CR.6 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 442 KCPRPTSFISGGSSKDDSFPCLRPACTGR 528
           K   P+SF+S GSS   + P ++P  T R
Sbjct: 240 KVSSPSSFLSPGSSTSSTVPNVKPTVTRR 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,987,319
Number of Sequences: 27780
Number of extensions: 282471
Number of successful extensions: 712
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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