Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11e10
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...   129   3e-32
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    31   0.009
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    31   0.009
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    31   0.009
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    31   0.009
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    29   0.029
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.3  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   7.7  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score =  129 bits (311), Expect = 3e-32
 Identities = 64/72 (88%), Positives = 69/72 (95%)
 Frame = +1

Query: 187 TTQSNLHQQDLSKLDVTKLSALSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRF 366
           T Q NL++QDLSKLDV+KL+ALS EVISRQATINIGTIGHVAHGKST+VKAISGVQTVRF
Sbjct: 11  TGQPNLYKQDLSKLDVSKLTALSREVISRQATINIGTIGHVAHGKSTIVKAISGVQTVRF 70

Query: 367 KNELERNITIKL 402
           KNELERNITIKL
Sbjct: 71  KNELERNITIKL 82


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 31.1 bits (67), Expect = 0.009
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 544 HVSFVDCPGHDILMATMLNGAAVMDAALLLIA 639
           +V+ +D PGH   +  M+ G +  D A+L++A
Sbjct: 86  YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 117


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 31.1 bits (67), Expect = 0.009
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 544 HVSFVDCPGHDILMATMLNGAAVMDAALLLIA 639
           +V+ +D PGH   +  M+ G +  D A+L++A
Sbjct: 13  YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 44


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 31.1 bits (67), Expect = 0.009
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 544 HVSFVDCPGHDILMATMLNGAAVMDAALLLIA 639
           +V+ +D PGH   +  M+ G +  D A+L++A
Sbjct: 29  YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 60


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 31.1 bits (67), Expect = 0.009
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 544 HVSFVDCPGHDILMATMLNGAAVMDAALLLIA 639
           +V+ +D PGH   +  M+ G +  D A+L++A
Sbjct: 86  YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 117


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 29.5 bits (63), Expect = 0.029
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +1

Query: 517 CTGRFQLV----RHVSFVDCPGHDILMATMLNGAAVMDAALLLIA 639
           C G F +       V+F+D PGH   ++    GA + D  +L++A
Sbjct: 181 CIGAFDVTLESGERVTFLDTPGHAAFISMRHRGAHITDIVVLVVA 225



 Score = 26.2 bits (55), Expect = 0.27
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 208 QQDLSKLDVTKLSALSP-EVISRQATINIGTIGHVAHGKSTVVKAI 342
           ++ +   D+TK    +  ++I R   + I  +GHV HGK+T++ A+
Sbjct: 122 KKTMENKDITKRPLPNESQLIKRHPIVTI--MGHVDHGKTTLLDAL 165


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 212 KTYLNWMSQNYLLSLPKSYQ 271
           + Y NW +Q+ + S+ K Y+
Sbjct: 837 RPYWNWSNQDVIKSIEKGYR 856


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 395 IVIFLSNSFLNLTVCT 348
           ++IF++  F N+T CT
Sbjct: 48  MIIFVTGIFGNITTCT 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,849
Number of Sequences: 438
Number of extensions: 3685
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)